Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03349

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03347 and H281DRAFT_03348 overlap by 4 nucleotidesH281DRAFT_03348 and H281DRAFT_03349 overlap by 4 nucleotidesH281DRAFT_03349 and H281DRAFT_03350 are separated by 17 nucleotidesH281DRAFT_03350 and H281DRAFT_03351 are separated by 86 nucleotides H281DRAFT_03347: H281DRAFT_03347 - formiminoglutamase, at 406,657 to 407,625 _03347 H281DRAFT_03348: H281DRAFT_03348 - amino acid ABC transporter ATP-binding protein, PAAT family, at 407,622 to 408,398 _03348 H281DRAFT_03349: H281DRAFT_03349 - amino acid ABC transporter membrane protein, PAAT family, at 408,395 to 409,063 _03349 H281DRAFT_03350: H281DRAFT_03350 - amino acid ABC transporter substrate-binding protein, PAAT family, at 409,081 to 409,836 _03350 H281DRAFT_03351: H281DRAFT_03351 - transcriptional regulator, IclR family, at 409,923 to 410,687 _03351 Position (kb) 408 409 410Strain fitness (log2 ratio) -2 -1 0 1at 408.065 kb on + strand, within H281DRAFT_03348at 408.227 kb on + strand, within H281DRAFT_03348at 408.475 kb on - strand, within H281DRAFT_03349at 408.496 kb on - strand, within H281DRAFT_03349at 409.125 kb on - strandat 409.209 kb on - strand, within H281DRAFT_03350at 409.238 kb on - strand, within H281DRAFT_03350at 409.238 kb on - strand, within H281DRAFT_03350at 409.500 kb on - strand, within H281DRAFT_03350at 409.544 kb on + strand, within H281DRAFT_03350at 409.544 kb on + strand, within H281DRAFT_03350at 409.544 kb on + strand, within H281DRAFT_03350at 409.545 kb on - strand, within H281DRAFT_03350at 409.938 kb on - strandat 409.965 kb on + strandat 409.966 kb on - strandat 409.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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408,065 + H281DRAFT_03348 0.57 -0.2
408,227 + H281DRAFT_03348 0.78 -2.2
408,475 - H281DRAFT_03349 0.12 -2.4
408,496 - H281DRAFT_03349 0.15 -2.0
409,125 - -1.3
409,209 - H281DRAFT_03350 0.17 +0.2
409,238 - H281DRAFT_03350 0.21 +0.0
409,238 - H281DRAFT_03350 0.21 -0.4
409,500 - H281DRAFT_03350 0.55 +0.3
409,544 + H281DRAFT_03350 0.61 +0.5
409,544 + H281DRAFT_03350 0.61 +0.2
409,544 + H281DRAFT_03350 0.61 -0.2
409,545 - H281DRAFT_03350 0.61 +1.0
409,938 - +0.5
409,965 + -0.7
409,966 - -0.1
409,966 - +0.4

Or see this region's nucleotide sequence