Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03258

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03256 and H281DRAFT_03257 are separated by 28 nucleotidesH281DRAFT_03257 and H281DRAFT_03258 overlap by 4 nucleotidesH281DRAFT_03258 and H281DRAFT_03259 are separated by 219 nucleotidesH281DRAFT_03259 and H281DRAFT_03260 are separated by 18 nucleotides H281DRAFT_03256: H281DRAFT_03256 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 312,035 to 313,492 _03256 H281DRAFT_03257: H281DRAFT_03257 - 5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG2 subunit, at 313,521 to 314,279 _03257 H281DRAFT_03258: H281DRAFT_03258 - 5-carboxy-2-oxohept-3-enedioate decarboxylase HpaG1 subunit (EC 4.1.1.68), at 314,276 to 315,049 _03258 H281DRAFT_03259: H281DRAFT_03259 - transcriptional regulator, MarR family, at 315,269 to 315,649 _03259 H281DRAFT_03260: H281DRAFT_03260 - D-serine deaminase, pyridoxal phosphate-dependent, at 315,668 to 316,810 _03260 Position (kb) 314 315 316Strain fitness (log2 ratio) -1 0 1at 313.684 kb on + strand, within H281DRAFT_03257at 314.747 kb on + strand, within H281DRAFT_03258at 314.824 kb on - strand, within H281DRAFT_03258at 315.197 kb on - strandat 315.726 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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313,684 + H281DRAFT_03257 0.21 -1.1
314,747 + H281DRAFT_03258 0.61 +0.9
314,824 - H281DRAFT_03258 0.71 +0.8
315,197 - -0.9
315,726 + +0.7

Or see this region's nucleotide sequence