Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02779 and H281DRAFT_02780 overlap by 8 nucleotides H281DRAFT_02780 and H281DRAFT_02781 are separated by 56 nucleotides H281DRAFT_02781 and H281DRAFT_02782 are separated by 34 nucleotides H281DRAFT_02782 and H281DRAFT_02783 overlap by 1 nucleotides H281DRAFT_02783 and H281DRAFT_02784 are separated by 166 nucleotides
H281DRAFT_02779: H281DRAFT_02779 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 370,682 to 371,050
_02779
H281DRAFT_02780: H281DRAFT_02780 - chemotaxis protein CheC, at 371,043 to 371,645
_02780
H281DRAFT_02781: H281DRAFT_02781 - Response regulator c-di-GMP phosphodiesterase, RpfG family, contains REC and HD-GYP domains, at 371,702 to 373,093
_02781
H281DRAFT_02782: H281DRAFT_02782 - hypothetical protein, at 373,128 to 373,613
_02782
H281DRAFT_02783: H281DRAFT_02783 - hypothetical protein, at 373,613 to 373,921
_02783
H281DRAFT_02784: H281DRAFT_02784 - Uncharacterized conserved protein YecE, DUF72 family, at 374,088 to 375,008
_02784
Position (kb) 371
372
373
374 Strain fitness (log2 ratio) -1
0
1
2 at 371.859 kb on - strand, within H281DRAFT_02781 at 372.484 kb on - strand, within H281DRAFT_02781 at 372.484 kb on - strand, within H281DRAFT_02781 at 372.982 kb on - strand at 373.988 kb on + strand at 373.989 kb on - strand at 373.989 kb on - strand at 373.994 kb on + strand at 373.995 kb on - strand at 373.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 371,859 - H281DRAFT_02781 0.11 +0.6 372,484 - H281DRAFT_02781 0.56 +0.4 372,484 - H281DRAFT_02781 0.56 +1.1 372,982 - -0.4 373,988 + +0.8 373,989 - -0.5 373,989 - +0.6 373,994 + -0.4 373,995 - +0.9 373,995 - +2.6
Or see this region's nucleotide sequence