Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02732

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02729 and H281DRAFT_02730 are separated by 71 nucleotidesH281DRAFT_02730 and H281DRAFT_02731 overlap by 4 nucleotidesH281DRAFT_02731 and H281DRAFT_02732 overlap by 4 nucleotidesH281DRAFT_02732 and H281DRAFT_02733 are separated by 129 nucleotidesH281DRAFT_02733 and H281DRAFT_02734 are separated by 32 nucleotidesH281DRAFT_02734 and H281DRAFT_02735 are separated by 149 nucleotides H281DRAFT_02729: H281DRAFT_02729 - Uncharacterized conserved protein, DUF1800 family, at 315,380 to 316,915 _02729 H281DRAFT_02730: H281DRAFT_02730 - Uncharacterized membrane protein, at 316,987 to 317,496 _02730 H281DRAFT_02731: H281DRAFT_02731 - hypothetical protein, at 317,493 to 317,912 _02731 H281DRAFT_02732: H281DRAFT_02732 - RNA polymerase sigma-70 factor, ECF subfamily, at 317,909 to 318,469 _02732 H281DRAFT_02733: H281DRAFT_02733 - hypothetical protein, at 318,599 to 318,700 _02733 H281DRAFT_02734: H281DRAFT_02734 - YXWGXW repeat-containing protein, at 318,733 to 319,053 _02734 H281DRAFT_02735: H281DRAFT_02735 - AraC family transcriptional regulator, activator of mtrCDE, at 319,203 to 320,165 _02735 Position (kb) 317 318 319Strain fitness (log2 ratio) -2 -1 0 1at 317.539 kb on - strand, within H281DRAFT_02731at 317.539 kb on - strand, within H281DRAFT_02731at 317.542 kb on + strand, within H281DRAFT_02731at 318.049 kb on - strand, within H281DRAFT_02732at 318.516 kb on + strandat 318.524 kb on + strandat 318.684 kb on - strand, within H281DRAFT_02733at 318.887 kb on + strand, within H281DRAFT_02734at 318.888 kb on - strand, within H281DRAFT_02734at 319.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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317,539 - H281DRAFT_02731 0.11 -0.8
317,539 - H281DRAFT_02731 0.11 -2.4
317,542 + H281DRAFT_02731 0.12 +0.5
318,049 - H281DRAFT_02732 0.25 -1.3
318,516 + +0.5
318,524 + +1.6
318,684 - H281DRAFT_02733 0.83 -1.0
318,887 + H281DRAFT_02734 0.48 -0.1
318,888 - H281DRAFT_02734 0.48 +0.4
319,151 + -0.1

Or see this region's nucleotide sequence