Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02660

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02659 and H281DRAFT_02660 are separated by 123 nucleotidesH281DRAFT_02660 and H281DRAFT_02661 are separated by 139 nucleotides H281DRAFT_02659: H281DRAFT_02659 - LysR family transcriptional regulator, cyn operon transcriptional activator, at 239,167 to 240,051 _02659 H281DRAFT_02660: H281DRAFT_02660 - formamidase, at 240,175 to 241,206 _02660 H281DRAFT_02661: H281DRAFT_02661 - transcriptional regulator, AraC family with amidase-like domain, at 241,346 to 243,721 _02661 Position (kb) 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1at 239.294 kb on + strand, within H281DRAFT_02659at 240.050 kb on - strandat 240.151 kb on + strandat 240.347 kb on - strand, within H281DRAFT_02660at 240.449 kb on - strand, within H281DRAFT_02660at 240.544 kb on + strand, within H281DRAFT_02660at 240.584 kb on - strand, within H281DRAFT_02660at 240.590 kb on - strand, within H281DRAFT_02660at 240.590 kb on - strand, within H281DRAFT_02660at 240.590 kb on - strand, within H281DRAFT_02660at 240.833 kb on + strand, within H281DRAFT_02660at 240.834 kb on - strand, within H281DRAFT_02660at 240.976 kb on + strand, within H281DRAFT_02660at 241.656 kb on - strand, within H281DRAFT_02661at 241.753 kb on - strand, within H281DRAFT_02661

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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239,294 + H281DRAFT_02659 0.14 -0.7
240,050 - -0.3
240,151 + -3.1
240,347 - H281DRAFT_02660 0.17 -2.1
240,449 - H281DRAFT_02660 0.27 +0.1
240,544 + H281DRAFT_02660 0.36 +0.3
240,584 - H281DRAFT_02660 0.40 +0.9
240,590 - H281DRAFT_02660 0.40 -0.1
240,590 - H281DRAFT_02660 0.40 -0.1
240,590 - H281DRAFT_02660 0.40 -1.2
240,833 + H281DRAFT_02660 0.64 -0.2
240,834 - H281DRAFT_02660 0.64 +0.6
240,976 + H281DRAFT_02660 0.78 +0.4
241,656 - H281DRAFT_02661 0.13 +0.3
241,753 - H281DRAFT_02661 0.17 +0.6

Or see this region's nucleotide sequence