Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02541 and H281DRAFT_02542 overlap by 1 nucleotides H281DRAFT_02542 and H281DRAFT_02543 are separated by 158 nucleotides
H281DRAFT_02541: H281DRAFT_02541 - 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33), at 116,013 to 117,410
_02541
H281DRAFT_02542: H281DRAFT_02542 - 2-Methylisocitrate lyase, PEP mutase family, at 117,410 to 118,282
_02542
H281DRAFT_02543: H281DRAFT_02543 - GntR family transcriptional regulator, at 118,441 to 119,238
_02543
Position (kb) 117
118
119 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10
11 at 116.909 kb on + strand, within H281DRAFT_02541 at 116.955 kb on + strand, within H281DRAFT_02541 at 116.955 kb on + strand, within H281DRAFT_02541 at 116.956 kb on - strand, within H281DRAFT_02541 at 117.494 kb on - strand at 117.640 kb on + strand, within H281DRAFT_02542 at 117.641 kb on - strand, within H281DRAFT_02542 at 118.205 kb on + strand at 118.205 kb on + strand at 118.312 kb on + strand at 118.312 kb on + strand at 118.422 kb on + strand at 118.438 kb on - strand at 118.480 kb on - strand at 118.480 kb on - strand at 118.495 kb on + strand at 118.495 kb on + strand at 118.704 kb on + strand, within H281DRAFT_02543 at 118.893 kb on + strand, within H281DRAFT_02543 at 119.123 kb on + strand, within H281DRAFT_02543
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 116,909 + H281DRAFT_02541 0.64 +0.2 116,955 + H281DRAFT_02541 0.67 +0.7 116,955 + H281DRAFT_02541 0.67 -0.6 116,956 - H281DRAFT_02541 0.67 +0.8 117,494 - +2.6 117,640 + H281DRAFT_02542 0.26 -0.1 117,641 - H281DRAFT_02542 0.26 +2.4 118,205 + +0.5 118,205 + -0.4 118,312 + -1.1 118,312 + -1.6 118,422 + +0.5 118,438 - +5.9 118,480 - +10.6 118,480 - +11.0 118,495 + +8.5 118,495 + +9.0 118,704 + H281DRAFT_02543 0.33 +10.3 118,893 + H281DRAFT_02543 0.57 +10.5 119,123 + H281DRAFT_02543 0.85 +11.4
Or see this region's nucleotide sequence