Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02538 and H281DRAFT_02539 are separated by 24 nucleotides H281DRAFT_02539 and H281DRAFT_02540 are separated by 39 nucleotides H281DRAFT_02540 and H281DRAFT_02541 are separated by 3 nucleotides
H281DRAFT_02538: H281DRAFT_02538 - fatty-acyl-CoA synthase, at 112,521 to 114,137
_02538
H281DRAFT_02539: H281DRAFT_02539 - Sugar phosphate permease, at 114,162 to 115,367
_02539
H281DRAFT_02540: H281DRAFT_02540 - 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33), at 115,407 to 116,009
_02540
H281DRAFT_02541: H281DRAFT_02541 - 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33), at 116,013 to 117,410
_02541
Position (kb) 114
115
116 Strain fitness (log2 ratio) -1
0
1 at 113.345 kb on + strand, within H281DRAFT_02538 at 113.584 kb on + strand, within H281DRAFT_02538 at 113.717 kb on + strand, within H281DRAFT_02538 at 113.822 kb on + strand, within H281DRAFT_02538 at 113.824 kb on + strand, within H281DRAFT_02538 at 113.825 kb on - strand, within H281DRAFT_02538 at 114.105 kb on - strand at 114.407 kb on - strand, within H281DRAFT_02539 at 114.459 kb on - strand, within H281DRAFT_02539 at 114.482 kb on - strand, within H281DRAFT_02539 at 114.668 kb on - strand, within H281DRAFT_02539 at 114.698 kb on - strand, within H281DRAFT_02539 at 115.312 kb on + strand at 115.312 kb on + strand at 115.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 113,345 + H281DRAFT_02538 0.51 -0.2 113,584 + H281DRAFT_02538 0.66 -0.1 113,717 + H281DRAFT_02538 0.74 +0.5 113,822 + H281DRAFT_02538 0.80 +0.1 113,824 + H281DRAFT_02538 0.81 -0.2 113,825 - H281DRAFT_02538 0.81 -1.5 114,105 - +0.3 114,407 - H281DRAFT_02539 0.20 +0.9 114,459 - H281DRAFT_02539 0.25 +0.2 114,482 - H281DRAFT_02539 0.27 +1.6 114,668 - H281DRAFT_02539 0.42 +1.0 114,698 - H281DRAFT_02539 0.44 +0.2 115,312 + -0.7 115,312 + -1.5 115,408 + +0.6
Or see this region's nucleotide sequence