Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02376

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02375 and H281DRAFT_02376 overlap by 4 nucleotidesH281DRAFT_02376 and H281DRAFT_02377 are separated by 55 nucleotides H281DRAFT_02375: H281DRAFT_02375 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 537,484 to 538,263 _02375 H281DRAFT_02376: H281DRAFT_02376 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 538,260 to 539,018 _02376 H281DRAFT_02377: H281DRAFT_02377 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 539,074 to 540,288 _02377 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 537.451 kb on + strandat 537.464 kb on + strandat 537.762 kb on - strand, within H281DRAFT_02375at 538.181 kb on - strand, within H281DRAFT_02375at 538.181 kb on - strand, within H281DRAFT_02375at 538.181 kb on - strand, within H281DRAFT_02375at 538.219 kb on + strandat 538.219 kb on + strandat 538.219 kb on + strandat 538.219 kb on + strandat 538.219 kb on + strandat 538.220 kb on - strandat 538.220 kb on - strandat 538.220 kb on - strandat 538.221 kb on + strandat 538.221 kb on + strandat 538.266 kb on - strandat 538.266 kb on - strandat 538.557 kb on + strand, within H281DRAFT_02376at 538.755 kb on - strand, within H281DRAFT_02376at 538.926 kb on + strand, within H281DRAFT_02376at 538.926 kb on + strand, within H281DRAFT_02376at 538.927 kb on - strand, within H281DRAFT_02376at 538.927 kb on - strand, within H281DRAFT_02376at 538.927 kb on - strand, within H281DRAFT_02376at 539.005 kb on + strandat 539.006 kb on - strandat 539.014 kb on + strandat 539.015 kb on - strandat 539.016 kb on + strandat 539.016 kb on + strandat 539.016 kb on + strandat 539.196 kb on + strand, within H281DRAFT_02377at 539.196 kb on + strand, within H281DRAFT_02377at 539.196 kb on + strand, within H281DRAFT_02377at 539.196 kb on + strand, within H281DRAFT_02377at 539.197 kb on - strand, within H281DRAFT_02377at 539.197 kb on - strand, within H281DRAFT_02377at 539.210 kb on - strand, within H281DRAFT_02377at 539.381 kb on + strand, within H281DRAFT_02377at 539.452 kb on + strand, within H281DRAFT_02377at 539.453 kb on - strand, within H281DRAFT_02377at 539.506 kb on + strand, within H281DRAFT_02377at 539.507 kb on - strand, within H281DRAFT_02377at 539.519 kb on - strand, within H281DRAFT_02377at 539.524 kb on + strand, within H281DRAFT_02377at 539.524 kb on + strand, within H281DRAFT_02377at 539.525 kb on - strand, within H281DRAFT_02377at 539.590 kb on + strand, within H281DRAFT_02377at 539.608 kb on + strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.609 kb on - strand, within H281DRAFT_02377at 539.793 kb on + strand, within H281DRAFT_02377at 539.793 kb on + strand, within H281DRAFT_02377at 539.794 kb on - strand, within H281DRAFT_02377at 539.794 kb on - strand, within H281DRAFT_02377at 539.856 kb on + strand, within H281DRAFT_02377at 539.871 kb on + strand, within H281DRAFT_02377at 539.871 kb on + strandat 539.913 kb on + strand, within H281DRAFT_02377at 539.962 kb on + strand, within H281DRAFT_02377at 539.962 kb on + strand, within H281DRAFT_02377

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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537,451 + +0.9
537,464 + -0.4
537,762 - H281DRAFT_02375 0.36 +1.5
538,181 - H281DRAFT_02375 0.89 +0.3
538,181 - H281DRAFT_02375 0.89 +0.9
538,181 - H281DRAFT_02375 0.89 +0.5
538,219 + -0.6
538,219 + +0.2
538,219 + +0.3
538,219 + -0.3
538,219 + -2.7
538,220 - +1.2
538,220 - +1.4
538,220 - +1.4
538,221 + -1.7
538,221 + -0.1
538,266 - -0.2
538,266 - +3.1
538,557 + H281DRAFT_02376 0.39 +1.0
538,755 - H281DRAFT_02376 0.65 +1.4
538,926 + H281DRAFT_02376 0.88 +0.8
538,926 + H281DRAFT_02376 0.88 +0.8
538,927 - H281DRAFT_02376 0.88 +1.5
538,927 - H281DRAFT_02376 0.88 +0.6
538,927 - H281DRAFT_02376 0.88 +1.3
539,005 + +0.9
539,006 - +1.8
539,014 + +1.3
539,015 - +1.2
539,016 + +0.7
539,016 + -0.0
539,016 + -1.0
539,196 + H281DRAFT_02377 0.10 +0.3
539,196 + H281DRAFT_02377 0.10 +0.5
539,196 + H281DRAFT_02377 0.10 +1.3
539,196 + H281DRAFT_02377 0.10 +0.1
539,197 - H281DRAFT_02377 0.10 +1.1
539,197 - H281DRAFT_02377 0.10 +1.5
539,210 - H281DRAFT_02377 0.11 +0.5
539,381 + H281DRAFT_02377 0.25 +3.3
539,452 + H281DRAFT_02377 0.31 -0.1
539,453 - H281DRAFT_02377 0.31 +1.2
539,506 + H281DRAFT_02377 0.36 +0.6
539,507 - H281DRAFT_02377 0.36 +1.8
539,519 - H281DRAFT_02377 0.37 +1.8
539,524 + H281DRAFT_02377 0.37 +0.6
539,524 + H281DRAFT_02377 0.37 +0.5
539,525 - H281DRAFT_02377 0.37 +0.5
539,590 + H281DRAFT_02377 0.42 +1.0
539,608 + H281DRAFT_02377 0.44 +1.5
539,609 - H281DRAFT_02377 0.44 +1.3
539,609 - H281DRAFT_02377 0.44 +1.5
539,609 - H281DRAFT_02377 0.44 +1.4
539,793 + H281DRAFT_02377 0.59 +0.3
539,793 + H281DRAFT_02377 0.59 +0.8
539,794 - H281DRAFT_02377 0.59 +1.3
539,794 - H281DRAFT_02377 0.59 +1.1
539,856 + H281DRAFT_02377 0.64 +0.1
539,871 + H281DRAFT_02377 0.66 -0.7
539,871 + -0.4
539,913 + H281DRAFT_02377 0.69 -0.8
539,962 + H281DRAFT_02377 0.73 +0.2
539,962 + H281DRAFT_02377 0.73 -0.2

Or see this region's nucleotide sequence