Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02086

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02085 and H281DRAFT_02086 are separated by 125 nucleotidesH281DRAFT_02086 and H281DRAFT_02087 are separated by 221 nucleotides H281DRAFT_02085: H281DRAFT_02085 - Glyoxylase, beta-lactamase superfamily II, at 209,638 to 210,708 _02085 H281DRAFT_02086: H281DRAFT_02086 - transcriptional regulator, MerR family, at 210,834 to 211,247 _02086 H281DRAFT_02087: H281DRAFT_02087 - isocitrate dehydrogenase kinase/phosphatase, at 211,469 to 213,316 _02087 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2 3at 209.877 kb on + strand, within H281DRAFT_02085at 209.877 kb on + strand, within H281DRAFT_02085at 209.963 kb on + strand, within H281DRAFT_02085at 209.964 kb on - strand, within H281DRAFT_02085at 210.200 kb on + strand, within H281DRAFT_02085at 210.203 kb on + strand, within H281DRAFT_02085at 210.203 kb on + strand, within H281DRAFT_02085at 210.203 kb on + strand, within H281DRAFT_02085at 210.204 kb on - strand, within H281DRAFT_02085at 210.204 kb on - strand, within H281DRAFT_02085at 210.330 kb on + strand, within H281DRAFT_02085at 210.330 kb on + strand, within H281DRAFT_02085at 210.330 kb on + strand, within H281DRAFT_02085at 210.330 kb on + strand, within H281DRAFT_02085at 210.330 kb on + strand, within H281DRAFT_02085at 210.331 kb on - strand, within H281DRAFT_02085at 210.331 kb on - strand, within H281DRAFT_02085at 210.331 kb on - strand, within H281DRAFT_02085at 210.331 kb on - strand, within H281DRAFT_02085at 210.331 kb on - strand, within H281DRAFT_02085at 210.332 kb on + strand, within H281DRAFT_02085at 210.332 kb on + strand, within H281DRAFT_02085at 210.333 kb on - strand, within H281DRAFT_02085at 210.583 kb on - strand, within H281DRAFT_02085at 210.846 kb on + strandat 210.903 kb on + strand, within H281DRAFT_02086at 210.903 kb on + strand, within H281DRAFT_02086at 210.920 kb on - strand, within H281DRAFT_02086at 210.963 kb on + strand, within H281DRAFT_02086at 210.964 kb on - strand, within H281DRAFT_02086at 211.057 kb on - strand, within H281DRAFT_02086at 211.087 kb on + strand, within H281DRAFT_02086at 211.087 kb on + strand, within H281DRAFT_02086at 211.088 kb on - strand, within H281DRAFT_02086at 211.179 kb on + strand, within H281DRAFT_02086at 211.180 kb on - strand, within H281DRAFT_02086at 211.180 kb on - strand, within H281DRAFT_02086at 211.180 kb on - strand, within H281DRAFT_02086at 211.180 kb on - strand, within H281DRAFT_02086at 211.246 kb on - strandat 211.299 kb on + strandat 211.423 kb on + strandat 211.424 kb on - strandat 211.424 kb on - strandat 211.551 kb on - strandat 211.643 kb on - strandat 211.643 kb on - strandat 211.643 kb on - strandat 211.650 kb on - strandat 211.662 kb on + strand, within H281DRAFT_02087at 211.663 kb on - strand, within H281DRAFT_02087at 211.709 kb on - strand, within H281DRAFT_02087at 211.745 kb on + strand, within H281DRAFT_02087at 211.832 kb on + strand, within H281DRAFT_02087at 211.912 kb on + strand, within H281DRAFT_02087at 211.917 kb on - strand, within H281DRAFT_02087at 211.926 kb on - strand, within H281DRAFT_02087at 211.926 kb on - strand, within H281DRAFT_02087at 211.926 kb on - strand, within H281DRAFT_02087at 211.926 kb on - strand, within H281DRAFT_02087at 212.056 kb on + strand, within H281DRAFT_02087at 212.057 kb on - strand, within H281DRAFT_02087at 212.126 kb on + strand, within H281DRAFT_02087at 212.126 kb on + strand, within H281DRAFT_02087at 212.126 kb on + strand, within H281DRAFT_02087at 212.127 kb on - strand, within H281DRAFT_02087at 212.127 kb on - strand, within H281DRAFT_02087at 212.128 kb on + strand, within H281DRAFT_02087at 212.128 kb on + strand, within H281DRAFT_02087at 212.129 kb on - strand, within H281DRAFT_02087at 212.143 kb on + strand, within H281DRAFT_02087at 212.155 kb on + strand, within H281DRAFT_02087

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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209,877 + H281DRAFT_02085 0.22 +0.3
209,877 + H281DRAFT_02085 0.22 +0.2
209,963 + H281DRAFT_02085 0.30 -0.2
209,964 - H281DRAFT_02085 0.30 +0.0
210,200 + H281DRAFT_02085 0.52 -1.7
210,203 + H281DRAFT_02085 0.53 +0.2
210,203 + H281DRAFT_02085 0.53 -1.4
210,203 + H281DRAFT_02085 0.53 -0.7
210,204 - H281DRAFT_02085 0.53 +0.1
210,204 - H281DRAFT_02085 0.53 +0.1
210,330 + H281DRAFT_02085 0.65 +0.5
210,330 + H281DRAFT_02085 0.65 -0.5
210,330 + H281DRAFT_02085 0.65 +0.8
210,330 + H281DRAFT_02085 0.65 +0.6
210,330 + H281DRAFT_02085 0.65 +0.9
210,331 - H281DRAFT_02085 0.65 -0.2
210,331 - H281DRAFT_02085 0.65 +1.0
210,331 - H281DRAFT_02085 0.65 -0.9
210,331 - H281DRAFT_02085 0.65 +1.4
210,331 - H281DRAFT_02085 0.65 -0.4
210,332 + H281DRAFT_02085 0.65 -1.2
210,332 + H281DRAFT_02085 0.65 +0.2
210,333 - H281DRAFT_02085 0.65 +0.4
210,583 - H281DRAFT_02085 0.88 -1.8
210,846 + +2.4
210,903 + H281DRAFT_02086 0.17 +2.2
210,903 + H281DRAFT_02086 0.17 +1.9
210,920 - H281DRAFT_02086 0.21 +2.5
210,963 + H281DRAFT_02086 0.31 +2.1
210,964 - H281DRAFT_02086 0.31 +2.2
211,057 - H281DRAFT_02086 0.54 +2.3
211,087 + H281DRAFT_02086 0.61 +2.7
211,087 + H281DRAFT_02086 0.61 +2.1
211,088 - H281DRAFT_02086 0.61 +2.0
211,179 + H281DRAFT_02086 0.83 +3.0
211,180 - H281DRAFT_02086 0.84 +2.1
211,180 - H281DRAFT_02086 0.84 +2.1
211,180 - H281DRAFT_02086 0.84 +1.7
211,180 - H281DRAFT_02086 0.84 +1.8
211,246 - +0.5
211,299 + +0.7
211,423 + +0.6
211,424 - +0.0
211,424 - +0.2
211,551 - -0.7
211,643 - +0.5
211,643 - -1.2
211,643 - -0.1
211,650 - +0.5
211,662 + H281DRAFT_02087 0.10 +0.7
211,663 - H281DRAFT_02087 0.10 +1.3
211,709 - H281DRAFT_02087 0.13 -0.5
211,745 + H281DRAFT_02087 0.15 +0.2
211,832 + H281DRAFT_02087 0.20 -1.0
211,912 + H281DRAFT_02087 0.24 -0.2
211,917 - H281DRAFT_02087 0.24 +0.6
211,926 - H281DRAFT_02087 0.25 -0.8
211,926 - H281DRAFT_02087 0.25 -0.7
211,926 - H281DRAFT_02087 0.25 -0.5
211,926 - H281DRAFT_02087 0.25 +0.2
212,056 + H281DRAFT_02087 0.32 +0.7
212,057 - H281DRAFT_02087 0.32 -0.4
212,126 + H281DRAFT_02087 0.36 +1.5
212,126 + H281DRAFT_02087 0.36 -0.4
212,126 + H281DRAFT_02087 0.36 +0.2
212,127 - H281DRAFT_02087 0.36 -0.8
212,127 - H281DRAFT_02087 0.36 +0.1
212,128 + H281DRAFT_02087 0.36 -0.7
212,128 + H281DRAFT_02087 0.36 +0.2
212,129 - H281DRAFT_02087 0.36 +0.4
212,143 + H281DRAFT_02087 0.36 +0.6
212,155 + H281DRAFT_02087 0.37 +1.9

Or see this region's nucleotide sequence