Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01940

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01939 and H281DRAFT_01940 are separated by 163 nucleotidesH281DRAFT_01940 and H281DRAFT_01941 are separated by 149 nucleotidesH281DRAFT_01941 and H281DRAFT_01942 are separated by 114 nucleotides H281DRAFT_01939: H281DRAFT_01939 - ribose-phosphate pyrophosphokinase, at 55,486 to 56,442 _01939 H281DRAFT_01940: H281DRAFT_01940 - LSU ribosomal protein L25P, at 56,606 to 57,223 _01940 H281DRAFT_01941: H281DRAFT_01941 - peptidyl-tRNA hydrolase, at 57,373 to 57,975 _01941 H281DRAFT_01942: H281DRAFT_01942 - histidinol-phosphate aminotransferase, at 58,090 to 59,169 _01942 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1at 56.440 kb on + strandat 56.444 kb on + strandat 57.322 kb on + strandat 57.928 kb on - strandat 57.973 kb on + strandat 57.973 kb on + strandat 57.974 kb on - strandat 57.974 kb on - strandat 58.078 kb on + strandat 58.132 kb on + strandat 58.133 kb on - strandat 58.133 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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56,440 + +0.7
56,444 + -0.1
57,322 + -0.3
57,928 - -2.1
57,973 + +0.1
57,973 + -1.1
57,974 - +0.7
57,974 - +0.4
58,078 + -0.4
58,132 + -0.2
58,133 - -0.2
58,133 - -0.0

Or see this region's nucleotide sequence