Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01784

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01782 and H281DRAFT_01783 are separated by 115 nucleotidesH281DRAFT_01783 and H281DRAFT_01784 are separated by 117 nucleotidesH281DRAFT_01784 and H281DRAFT_01785 are separated by 160 nucleotidesH281DRAFT_01785 and H281DRAFT_01786 overlap by 4 nucleotides H281DRAFT_01782: H281DRAFT_01782 - Predicted arabinose efflux permease, MFS family, at 684,387 to 685,697 _01782 H281DRAFT_01783: H281DRAFT_01783 - Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding, at 685,813 to 686,397 _01783 H281DRAFT_01784: H281DRAFT_01784 - Pimeloyl-ACP methyl ester carboxylesterase, at 686,515 to 687,387 _01784 H281DRAFT_01785: H281DRAFT_01785 - hypothetical protein, at 687,548 to 688,192 _01785 H281DRAFT_01786: H281DRAFT_01786 - RNA polymerase sigma-70 factor, ECF subfamily, at 688,189 to 688,779 _01786 Position (kb) 686 687 688Strain fitness (log2 ratio) -2 -1 0 1at 685.711 kb on - strandat 685.929 kb on - strand, within H281DRAFT_01783at 686.072 kb on + strand, within H281DRAFT_01783at 686.072 kb on + strand, within H281DRAFT_01783at 686.073 kb on - strand, within H281DRAFT_01783at 686.073 kb on - strand, within H281DRAFT_01783at 686.073 kb on - strand, within H281DRAFT_01783at 686.276 kb on + strand, within H281DRAFT_01783at 686.285 kb on - strand, within H281DRAFT_01783at 686.647 kb on - strand, within H281DRAFT_01784at 686.936 kb on + strand, within H281DRAFT_01784at 687.144 kb on - strand, within H281DRAFT_01784at 687.211 kb on - strand, within H281DRAFT_01784at 687.245 kb on + strand, within H281DRAFT_01784at 688.309 kb on + strand, within H281DRAFT_01786at 688.310 kb on - strand, within H281DRAFT_01786at 688.310 kb on - strand, within H281DRAFT_01786

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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685,711 - +0.3
685,929 - H281DRAFT_01783 0.20 +0.0
686,072 + H281DRAFT_01783 0.44 +0.1
686,072 + H281DRAFT_01783 0.44 +0.8
686,073 - H281DRAFT_01783 0.44 +0.6
686,073 - H281DRAFT_01783 0.44 +1.0
686,073 - H281DRAFT_01783 0.44 +0.7
686,276 + H281DRAFT_01783 0.79 -0.2
686,285 - H281DRAFT_01783 0.81 +1.1
686,647 - H281DRAFT_01784 0.15 +0.9
686,936 + H281DRAFT_01784 0.48 +0.2
687,144 - H281DRAFT_01784 0.72 +0.2
687,211 - H281DRAFT_01784 0.80 +1.0
687,245 + H281DRAFT_01784 0.84 +0.5
688,309 + H281DRAFT_01786 0.20 -1.8
688,310 - H281DRAFT_01786 0.20 -0.5
688,310 - H281DRAFT_01786 0.20 +1.1

Or see this region's nucleotide sequence