Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01430

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01429 and H281DRAFT_01430 are separated by 109 nucleotidesH281DRAFT_01430 and H281DRAFT_01431 are separated by 152 nucleotides H281DRAFT_01429: H281DRAFT_01429 - Glycosyltransferases involved in cell wall biogenesis, at 284,623 to 285,630 _01429 H281DRAFT_01430: H281DRAFT_01430 - succinoglycan biosynthesis protein ExoO, at 285,740 to 286,816 _01430 H281DRAFT_01431: H281DRAFT_01431 - Predicted hydrolase, HAD superfamily, at 286,969 to 289,065 _01431 Position (kb) 285 286 287Strain fitness (log2 ratio) -1 0 1 2at 285.005 kb on - strand, within H281DRAFT_01429at 285.005 kb on - strand, within H281DRAFT_01429at 285.239 kb on - strand, within H281DRAFT_01429at 285.389 kb on - strand, within H281DRAFT_01429at 285.456 kb on - strand, within H281DRAFT_01429at 285.789 kb on - strandat 286.233 kb on + strand, within H281DRAFT_01430at 286.234 kb on - strand, within H281DRAFT_01430at 286.346 kb on - strand, within H281DRAFT_01430at 286.459 kb on - strand, within H281DRAFT_01430at 287.302 kb on + strand, within H281DRAFT_01431at 287.701 kb on - strand, within H281DRAFT_01431at 287.805 kb on + strand, within H281DRAFT_01431at 287.805 kb on + strand, within H281DRAFT_01431

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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285,005 - H281DRAFT_01429 0.38 +0.3
285,005 - H281DRAFT_01429 0.38 -0.1
285,239 - H281DRAFT_01429 0.61 +0.6
285,389 - H281DRAFT_01429 0.76 +0.3
285,456 - H281DRAFT_01429 0.83 +0.7
285,789 - -0.4
286,233 + H281DRAFT_01430 0.46 +0.3
286,234 - H281DRAFT_01430 0.46 +0.1
286,346 - H281DRAFT_01430 0.56 +0.7
286,459 - H281DRAFT_01430 0.67 +1.8
287,302 + H281DRAFT_01431 0.16 +0.9
287,701 - H281DRAFT_01431 0.35 -0.2
287,805 + H281DRAFT_01431 0.40 +0.7
287,805 + H281DRAFT_01431 0.40 -1.0

Or see this region's nucleotide sequence