Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01058

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01057 and H281DRAFT_01058 overlap by 4 nucleotidesH281DRAFT_01058 and H281DRAFT_01059 are separated by 213 nucleotides H281DRAFT_01057: H281DRAFT_01057 - monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-), at 1,186,787 to 1,188,340 _01057 H281DRAFT_01058: H281DRAFT_01058 - monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-), at 1,188,337 to 1,189,491 _01058 H281DRAFT_01059: H281DRAFT_01059 - Predicted transcriptional regulators, at 1,189,705 to 1,190,628 _01059 Position (kb) 1188 1189 1190Strain fitness (log2 ratio) -1 0 1at 1187.580 kb on + strand, within H281DRAFT_01057at 1187.580 kb on + strand, within H281DRAFT_01057at 1187.730 kb on + strand, within H281DRAFT_01057at 1188.157 kb on - strand, within H281DRAFT_01057at 1188.410 kb on - strandat 1188.526 kb on - strand, within H281DRAFT_01058at 1188.763 kb on - strand, within H281DRAFT_01058at 1188.771 kb on - strand, within H281DRAFT_01058at 1189.404 kb on - strandat 1189.645 kb on - strandat 1189.658 kb on - strandat 1189.868 kb on - strandat 1189.926 kb on - strand, within H281DRAFT_01059at 1189.926 kb on - strand, within H281DRAFT_01059at 1189.926 kb on - strand, within H281DRAFT_01059at 1189.929 kb on + strand, within H281DRAFT_01059at 1189.929 kb on + strand, within H281DRAFT_01059at 1190.125 kb on - strand, within H281DRAFT_01059at 1190.267 kb on - strand, within H281DRAFT_01059at 1190.291 kb on + strand, within H281DRAFT_01059

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,187,580 + H281DRAFT_01057 0.51 -0.1
1,187,580 + H281DRAFT_01057 0.51 +1.2
1,187,730 + H281DRAFT_01057 0.61 +0.5
1,188,157 - H281DRAFT_01057 0.88 +0.2
1,188,410 - -1.4
1,188,526 - H281DRAFT_01058 0.16 -0.3
1,188,763 - H281DRAFT_01058 0.37 +0.1
1,188,771 - H281DRAFT_01058 0.38 -0.3
1,189,404 - -1.2
1,189,645 - +0.3
1,189,658 - +0.2
1,189,868 - -1.0
1,189,926 - H281DRAFT_01059 0.24 +0.4
1,189,926 - H281DRAFT_01059 0.24 +1.0
1,189,926 - H281DRAFT_01059 0.24 -0.7
1,189,929 + H281DRAFT_01059 0.24 +0.2
1,189,929 + H281DRAFT_01059 0.24 -0.8
1,190,125 - H281DRAFT_01059 0.45 -0.5
1,190,267 - H281DRAFT_01059 0.61 +0.9
1,190,291 + H281DRAFT_01059 0.63 -1.7

Or see this region's nucleotide sequence