Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00876

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00874 and H281DRAFT_00875 are separated by 99 nucleotidesH281DRAFT_00875 and H281DRAFT_00876 are separated by 50 nucleotidesH281DRAFT_00876 and H281DRAFT_00877 are separated by 142 nucleotidesH281DRAFT_00877 and H281DRAFT_00878 are separated by 98 nucleotides H281DRAFT_00874: H281DRAFT_00874 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 966,829 to 968,439 _00874 H281DRAFT_00875: H281DRAFT_00875 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 968,539 to 969,042 _00875 H281DRAFT_00876: H281DRAFT_00876 - PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3), at 969,093 to 971,066 _00876 H281DRAFT_00877: H281DRAFT_00877 - large conductance mechanosensitive channel, at 971,209 to 971,655 _00877 H281DRAFT_00878: H281DRAFT_00878 - threonine dehydratase, at 971,754 to 972,788 _00878 Position (kb) 969 970 971 972Strain fitness (log2 ratio) -2 -1 0 1at 968.215 kb on + strand, within H281DRAFT_00874at 968.216 kb on - strand, within H281DRAFT_00874at 968.216 kb on - strand, within H281DRAFT_00874at 968.216 kb on - strand, within H281DRAFT_00874at 968.218 kb on + strand, within H281DRAFT_00874at 968.219 kb on - strand, within H281DRAFT_00874at 968.255 kb on - strand, within H281DRAFT_00874at 968.255 kb on - strand, within H281DRAFT_00874at 968.300 kb on + strandat 968.300 kb on + strandat 968.498 kb on - strandat 968.498 kb on - strandat 968.538 kb on + strandat 968.539 kb on - strandat 968.774 kb on + strand, within H281DRAFT_00875at 968.775 kb on - strand, within H281DRAFT_00875at 968.908 kb on + strand, within H281DRAFT_00875at 968.909 kb on - strand, within H281DRAFT_00875at 968.930 kb on - strand, within H281DRAFT_00875at 968.934 kb on + strand, within H281DRAFT_00875at 968.935 kb on - strand, within H281DRAFT_00875at 968.961 kb on + strand, within H281DRAFT_00875at 968.972 kb on + strand, within H281DRAFT_00875at 969.061 kb on + strandat 969.061 kb on + strandat 969.061 kb on + strandat 969.062 kb on - strandat 969.074 kb on + strandat 969.075 kb on - strandat 969.276 kb on + strandat 969.277 kb on - strandat 969.448 kb on - strand, within H281DRAFT_00876at 969.540 kb on + strand, within H281DRAFT_00876at 969.624 kb on + strand, within H281DRAFT_00876at 969.624 kb on + strand, within H281DRAFT_00876at 969.624 kb on + strand, within H281DRAFT_00876at 969.625 kb on - strand, within H281DRAFT_00876at 969.722 kb on - strand, within H281DRAFT_00876at 969.751 kb on - strand, within H281DRAFT_00876at 969.769 kb on + strand, within H281DRAFT_00876at 970.019 kb on - strand, within H281DRAFT_00876at 970.205 kb on - strand, within H281DRAFT_00876at 970.287 kb on + strand, within H281DRAFT_00876at 970.288 kb on - strand, within H281DRAFT_00876at 970.288 kb on - strand, within H281DRAFT_00876at 970.288 kb on - strand, within H281DRAFT_00876at 970.288 kb on - strandat 970.325 kb on - strand, within H281DRAFT_00876at 970.377 kb on + strand, within H281DRAFT_00876at 970.377 kb on + strand, within H281DRAFT_00876at 970.378 kb on - strand, within H281DRAFT_00876at 970.558 kb on + strand, within H281DRAFT_00876at 970.558 kb on + strand, within H281DRAFT_00876at 970.559 kb on - strand, within H281DRAFT_00876at 970.559 kb on - strand, within H281DRAFT_00876at 970.559 kb on - strand, within H281DRAFT_00876at 970.838 kb on + strand, within H281DRAFT_00876at 970.890 kb on + strandat 970.951 kb on + strandat 970.951 kb on + strandat 970.951 kb on + strandat 970.952 kb on - strandat 970.952 kb on - strandat 970.952 kb on - strandat 971.064 kb on + strandat 971.064 kb on + strandat 971.167 kb on + strandat 971.171 kb on - strandat 971.368 kb on - strand, within H281DRAFT_00877at 971.431 kb on - strand, within H281DRAFT_00877at 971.619 kb on + strandat 971.690 kb on - strandat 971.706 kb on + strandat 971.706 kb on + strandat 971.755 kb on + strandat 971.884 kb on - strand, within H281DRAFT_00878at 972.019 kb on + strand, within H281DRAFT_00878at 972.019 kb on + strand, within H281DRAFT_00878at 972.020 kb on - strand, within H281DRAFT_00878at 972.020 kb on - strand, within H281DRAFT_00878at 972.020 kb on - strand, within H281DRAFT_00878

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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968,215 + H281DRAFT_00874 0.86 -2.3
968,216 - H281DRAFT_00874 0.86 +0.8
968,216 - H281DRAFT_00874 0.86 -0.4
968,216 - H281DRAFT_00874 0.86 +0.3
968,218 + H281DRAFT_00874 0.86 +0.1
968,219 - H281DRAFT_00874 0.86 +0.1
968,255 - H281DRAFT_00874 0.89 +0.6
968,255 - H281DRAFT_00874 0.89 -0.3
968,300 + -0.6
968,300 + +0.2
968,498 - -0.2
968,498 - +0.7
968,538 + +0.7
968,539 - -0.4
968,774 + H281DRAFT_00875 0.47 +0.3
968,775 - H281DRAFT_00875 0.47 +1.3
968,908 + H281DRAFT_00875 0.73 -0.5
968,909 - H281DRAFT_00875 0.73 +0.4
968,930 - H281DRAFT_00875 0.78 +0.5
968,934 + H281DRAFT_00875 0.78 -0.0
968,935 - H281DRAFT_00875 0.79 +0.6
968,961 + H281DRAFT_00875 0.84 -0.3
968,972 + H281DRAFT_00875 0.86 -0.8
969,061 + -0.4
969,061 + -0.6
969,061 + -0.7
969,062 - +0.2
969,074 + +0.9
969,075 - +0.2
969,276 + -1.2
969,277 - +0.4
969,448 - H281DRAFT_00876 0.18 -0.4
969,540 + H281DRAFT_00876 0.23 +0.8
969,624 + H281DRAFT_00876 0.27 +1.0
969,624 + H281DRAFT_00876 0.27 +0.2
969,624 + H281DRAFT_00876 0.27 -0.7
969,625 - H281DRAFT_00876 0.27 -0.4
969,722 - H281DRAFT_00876 0.32 +1.0
969,751 - H281DRAFT_00876 0.33 +1.1
969,769 + H281DRAFT_00876 0.34 +0.8
970,019 - H281DRAFT_00876 0.47 -0.2
970,205 - H281DRAFT_00876 0.56 +1.3
970,287 + H281DRAFT_00876 0.60 -1.4
970,288 - H281DRAFT_00876 0.61 +0.2
970,288 - H281DRAFT_00876 0.61 -0.4
970,288 - H281DRAFT_00876 0.61 +0.4
970,288 - -0.0
970,325 - H281DRAFT_00876 0.62 -0.4
970,377 + H281DRAFT_00876 0.65 +0.5
970,377 + H281DRAFT_00876 0.65 -0.2
970,378 - H281DRAFT_00876 0.65 -0.6
970,558 + H281DRAFT_00876 0.74 +0.4
970,558 + H281DRAFT_00876 0.74 +0.1
970,559 - H281DRAFT_00876 0.74 +0.8
970,559 - H281DRAFT_00876 0.74 +0.1
970,559 - H281DRAFT_00876 0.74 -0.2
970,838 + H281DRAFT_00876 0.88 +0.5
970,890 + -0.1
970,951 + +0.3
970,951 + +0.3
970,951 + -0.4
970,952 - +0.7
970,952 - +0.8
970,952 - +0.0
971,064 + +0.8
971,064 + +0.8
971,167 + +0.0
971,171 - +1.1
971,368 - H281DRAFT_00877 0.36 -0.7
971,431 - H281DRAFT_00877 0.50 -1.5
971,619 + +1.2
971,690 - -0.5
971,706 + -0.3
971,706 + +0.9
971,755 + +0.2
971,884 - H281DRAFT_00878 0.13 -0.9
972,019 + H281DRAFT_00878 0.26 -1.1
972,019 + H281DRAFT_00878 0.26 -1.2
972,020 - H281DRAFT_00878 0.26 -0.3
972,020 - H281DRAFT_00878 0.26 +0.0
972,020 - H281DRAFT_00878 0.26 -1.6

Or see this region's nucleotide sequence