Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00080 and PGA1_65p00090 are separated by 261 nucleotides PGA1_65p00090 and PGA1_65p00100 are separated by 583 nucleotides
PGA1_65p00080: PGA1_65p00080 - putative glycosyl transferase, at 11,335 to 12,579
_65p00080
PGA1_65p00090: PGA1_65p00090 - Uncharacterized conserved protein, at 12,841 to 14,850
_65p00090
PGA1_65p00100: PGA1_65p00100 - Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases, at 15,434 to 15,985
_65p00100
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -1
0
1
2 at 11.869 kb on - strand, within PGA1_65p00080 at 12.021 kb on + strand, within PGA1_65p00080 at 12.053 kb on + strand, within PGA1_65p00080 at 12.083 kb on - strand, within PGA1_65p00080 at 12.139 kb on - strand, within PGA1_65p00080 at 12.155 kb on + strand, within PGA1_65p00080 at 12.251 kb on + strand, within PGA1_65p00080 at 12.646 kb on - strand at 12.814 kb on + strand at 12.912 kb on - strand at 13.044 kb on + strand, within PGA1_65p00090 at 13.052 kb on + strand, within PGA1_65p00090 at 13.074 kb on + strand, within PGA1_65p00090 at 13.088 kb on - strand, within PGA1_65p00090 at 13.088 kb on - strand, within PGA1_65p00090 at 13.372 kb on + strand, within PGA1_65p00090 at 13.372 kb on + strand, within PGA1_65p00090 at 13.390 kb on - strand, within PGA1_65p00090 at 13.441 kb on + strand, within PGA1_65p00090 at 13.610 kb on + strand, within PGA1_65p00090 at 13.645 kb on + strand, within PGA1_65p00090 at 14.118 kb on + strand, within PGA1_65p00090 at 14.127 kb on + strand, within PGA1_65p00090 at 14.271 kb on - strand, within PGA1_65p00090 at 14.301 kb on - strand, within PGA1_65p00090 at 14.305 kb on + strand, within PGA1_65p00090 at 14.610 kb on - strand, within PGA1_65p00090 at 14.651 kb on - strand at 14.829 kb on + strand at 14.873 kb on - strand at 14.873 kb on - strand at 14.990 kb on + strand at 15.008 kb on - strand at 15.646 kb on + strand, within PGA1_65p00100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 11,869 - PGA1_65p00080 0.43 -0.6 12,021 + PGA1_65p00080 0.55 -0.6 12,053 + PGA1_65p00080 0.58 +1.4 12,083 - PGA1_65p00080 0.60 -0.9 12,139 - PGA1_65p00080 0.65 -0.3 12,155 + PGA1_65p00080 0.66 +0.3 12,251 + PGA1_65p00080 0.74 -0.4 12,646 - +1.1 12,814 + +0.5 12,912 - +0.8 13,044 + PGA1_65p00090 0.10 -0.4 13,052 + PGA1_65p00090 0.10 -0.2 13,074 + PGA1_65p00090 0.12 +1.5 13,088 - PGA1_65p00090 0.12 +1.3 13,088 - PGA1_65p00090 0.12 +0.9 13,372 + PGA1_65p00090 0.26 -0.9 13,372 + PGA1_65p00090 0.26 +0.5 13,390 - PGA1_65p00090 0.27 -0.6 13,441 + PGA1_65p00090 0.30 +0.1 13,610 + PGA1_65p00090 0.38 +2.3 13,645 + PGA1_65p00090 0.40 -0.3 14,118 + PGA1_65p00090 0.64 -1.0 14,127 + PGA1_65p00090 0.64 +0.8 14,271 - PGA1_65p00090 0.71 +0.3 14,301 - PGA1_65p00090 0.73 +0.4 14,305 + PGA1_65p00090 0.73 +1.1 14,610 - PGA1_65p00090 0.88 -1.7 14,651 - -0.4 14,829 + +0.3 14,873 - +0.5 14,873 - -0.4 14,990 + -0.2 15,008 - +0.6 15,646 + PGA1_65p00100 0.38 -0.9
Or see this region's nucleotide sequence