Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00520 and PGA1_78p00530 are separated by 3 nucleotides PGA1_78p00530 and PGA1_78p00540 are separated by 200 nucleotides PGA1_78p00540 and PGA1_78p00550 are separated by 118 nucleotides PGA1_78p00550 and PGA1_78p00560 overlap by 4 nucleotides PGA1_78p00560 and PGA1_78p00570 are separated by 60 nucleotides
PGA1_78p00520: PGA1_78p00520 - putative secretion protein, HylD family, at 66,326 to 67,732
_78p00520
PGA1_78p00530: PGA1_78p00530 - putative outer membrane protein, at 67,736 to 68,488
_78p00530
PGA1_78p00540: PGA1_78p00540 - hypothetical protein, at 68,689 to 69,441
_78p00540
PGA1_78p00550: PGA1_78p00550 - putative transcriptional regulator, ArsR family, at 69,560 to 69,922
_78p00550
PGA1_78p00560: PGA1_78p00560 - Uncharacterized conserved protein, at 69,919 to 70,332
_78p00560
PGA1_78p00570: PGA1_78p00570 - hypothetical protein, at 70,393 to 71,322
_78p00570
Position (kb) 68
69
70 Strain fitness (log2 ratio) -1
0
1 at 67.695 kb on + strand at 67.743 kb on + strand at 67.753 kb on + strand at 67.753 kb on + strand at 67.761 kb on - strand at 68.674 kb on - strand at 68.728 kb on + strand at 68.864 kb on + strand, within PGA1_78p00540 at 68.867 kb on - strand, within PGA1_78p00540 at 68.878 kb on - strand, within PGA1_78p00540 at 68.929 kb on - strand, within PGA1_78p00540 at 69.046 kb on + strand, within PGA1_78p00540 at 69.111 kb on - strand, within PGA1_78p00540 at 69.213 kb on + strand, within PGA1_78p00540 at 69.969 kb on - strand, within PGA1_78p00560 at 69.977 kb on + strand, within PGA1_78p00560 at 69.980 kb on - strand, within PGA1_78p00560 at 69.985 kb on - strand, within PGA1_78p00560 at 70.023 kb on + strand, within PGA1_78p00560 at 70.113 kb on + strand, within PGA1_78p00560
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 67,695 + +1.1 67,743 + -0.2 67,753 + -0.2 67,753 + +0.4 67,761 - -1.3 68,674 - +0.3 68,728 + -0.1 68,864 + PGA1_78p00540 0.23 -1.1 68,867 - PGA1_78p00540 0.24 +1.0 68,878 - PGA1_78p00540 0.25 +1.0 68,929 - PGA1_78p00540 0.32 +1.3 69,046 + PGA1_78p00540 0.47 +0.5 69,111 - PGA1_78p00540 0.56 +0.9 69,213 + PGA1_78p00540 0.70 +0.7 69,969 - PGA1_78p00560 0.12 +0.7 69,977 + PGA1_78p00560 0.14 +1.2 69,980 - PGA1_78p00560 0.15 +0.4 69,985 - PGA1_78p00560 0.16 +0.1 70,023 + PGA1_78p00560 0.25 -1.1 70,113 + PGA1_78p00560 0.47 -0.6
Or see this region's nucleotide sequence