Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01680

Experiment: m.b. Lomefloxacin 0.00078125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_262p01670 and PGA1_262p01680 are separated by 57 nucleotidesPGA1_262p01680 and PGA1_262p01690 are separated by 107 nucleotides PGA1_262p01670: PGA1_262p01670 - putative transcriptional regulator, LysR family, at 182,605 to 183,483 _262p01670 PGA1_262p01680: PGA1_262p01680 - hypothetical protein, at 183,541 to 184,329 _262p01680 PGA1_262p01690: PGA1_262p01690 - peptidase S15, at 184,437 to 186,416 _262p01690 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2at 182.675 kb on + strandat 182.712 kb on - strand, within PGA1_262p01670at 182.721 kb on + strand, within PGA1_262p01670at 182.721 kb on + strand, within PGA1_262p01670at 182.736 kb on + strand, within PGA1_262p01670at 182.749 kb on + strand, within PGA1_262p01670at 182.879 kb on + strand, within PGA1_262p01670at 182.887 kb on - strand, within PGA1_262p01670at 182.925 kb on - strand, within PGA1_262p01670at 182.960 kb on + strand, within PGA1_262p01670at 183.106 kb on - strand, within PGA1_262p01670at 183.112 kb on - strand, within PGA1_262p01670at 183.156 kb on - strand, within PGA1_262p01670at 183.156 kb on - strand, within PGA1_262p01670at 183.218 kb on - strand, within PGA1_262p01670at 183.223 kb on - strand, within PGA1_262p01670at 183.243 kb on - strand, within PGA1_262p01670at 183.257 kb on + strand, within PGA1_262p01670at 183.257 kb on + strand, within PGA1_262p01670at 183.262 kb on + strand, within PGA1_262p01670at 183.265 kb on - strand, within PGA1_262p01670at 183.265 kb on - strand, within PGA1_262p01670at 183.609 kb on + strandat 183.617 kb on - strandat 183.734 kb on - strand, within PGA1_262p01680at 183.734 kb on - strand, within PGA1_262p01680at 183.762 kb on + strand, within PGA1_262p01680at 183.775 kb on - strand, within PGA1_262p01680at 183.775 kb on - strand, within PGA1_262p01680at 183.803 kb on - strand, within PGA1_262p01680at 183.960 kb on + strand, within PGA1_262p01680at 183.960 kb on + strand, within PGA1_262p01680at 183.968 kb on - strand, within PGA1_262p01680at 184.074 kb on + strand, within PGA1_262p01680at 184.270 kb on + strandat 184.570 kb on - strandat 184.722 kb on + strand, within PGA1_262p01690at 184.832 kb on + strand, within PGA1_262p01690at 184.840 kb on - strand, within PGA1_262p01690at 184.840 kb on - strand, within PGA1_262p01690at 184.933 kb on + strand, within PGA1_262p01690at 184.940 kb on - strand, within PGA1_262p01690at 184.940 kb on - strand, within PGA1_262p01690at 184.945 kb on - strand, within PGA1_262p01690at 185.003 kb on - strand, within PGA1_262p01690at 185.016 kb on + strand, within PGA1_262p01690at 185.032 kb on - strand, within PGA1_262p01690at 185.041 kb on + strand, within PGA1_262p01690at 185.158 kb on + strand, within PGA1_262p01690at 185.201 kb on - strand, within PGA1_262p01690at 185.201 kb on - strand, within PGA1_262p01690at 185.219 kb on + strand, within PGA1_262p01690at 185.238 kb on - strand, within PGA1_262p01690at 185.256 kb on - strand, within PGA1_262p01690at 185.284 kb on - strand, within PGA1_262p01690at 185.309 kb on + strand, within PGA1_262p01690at 185.309 kb on + strand, within PGA1_262p01690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM
remove
182,675 + -0.6
182,712 - PGA1_262p01670 0.12 -0.3
182,721 + PGA1_262p01670 0.13 +1.0
182,721 + PGA1_262p01670 0.13 -0.1
182,736 + PGA1_262p01670 0.15 -1.0
182,749 + PGA1_262p01670 0.16 -0.5
182,879 + PGA1_262p01670 0.31 +0.2
182,887 - PGA1_262p01670 0.32 -1.1
182,925 - PGA1_262p01670 0.36 -0.6
182,960 + PGA1_262p01670 0.40 -0.8
183,106 - PGA1_262p01670 0.57 -0.6
183,112 - PGA1_262p01670 0.58 +2.0
183,156 - PGA1_262p01670 0.63 +0.2
183,156 - PGA1_262p01670 0.63 -0.6
183,218 - PGA1_262p01670 0.70 +0.3
183,223 - PGA1_262p01670 0.70 +0.7
183,243 - PGA1_262p01670 0.73 +2.0
183,257 + PGA1_262p01670 0.74 +1.0
183,257 + PGA1_262p01670 0.74 -0.6
183,262 + PGA1_262p01670 0.75 -0.1
183,265 - PGA1_262p01670 0.75 -0.7
183,265 - PGA1_262p01670 0.75 -1.2
183,609 + +0.5
183,617 - -0.6
183,734 - PGA1_262p01680 0.24 +0.6
183,734 - PGA1_262p01680 0.24 -0.2
183,762 + PGA1_262p01680 0.28 +0.3
183,775 - PGA1_262p01680 0.30 +1.2
183,775 - PGA1_262p01680 0.30 -0.5
183,803 - PGA1_262p01680 0.33 -0.0
183,960 + PGA1_262p01680 0.53 +0.7
183,960 + PGA1_262p01680 0.53 +1.3
183,968 - PGA1_262p01680 0.54 +0.5
184,074 + PGA1_262p01680 0.68 -0.6
184,270 + -0.2
184,570 - -0.4
184,722 + PGA1_262p01690 0.14 -1.9
184,832 + PGA1_262p01690 0.20 -0.2
184,840 - PGA1_262p01690 0.20 +0.4
184,840 - PGA1_262p01690 0.20 +0.7
184,933 + PGA1_262p01690 0.25 +0.1
184,940 - PGA1_262p01690 0.25 +0.2
184,940 - PGA1_262p01690 0.25 +1.7
184,945 - PGA1_262p01690 0.26 +1.2
185,003 - PGA1_262p01690 0.29 +0.1
185,016 + PGA1_262p01690 0.29 -0.5
185,032 - PGA1_262p01690 0.30 +0.3
185,041 + PGA1_262p01690 0.31 +1.0
185,158 + PGA1_262p01690 0.36 -0.0
185,201 - PGA1_262p01690 0.39 +0.2
185,201 - PGA1_262p01690 0.39 -1.6
185,219 + PGA1_262p01690 0.39 -0.8
185,238 - PGA1_262p01690 0.40 -0.3
185,256 - PGA1_262p01690 0.41 -0.0
185,284 - PGA1_262p01690 0.43 -0.6
185,309 + PGA1_262p01690 0.44 +0.5
185,309 + PGA1_262p01690 0.44 +0.1

Or see this region's nucleotide sequence