Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01350 and PGA1_262p01360 are separated by 96 nucleotides PGA1_262p01360 and PGA1_262p01370 are separated by 90 nucleotides
PGA1_262p01350: PGA1_262p01350 - putative vanillate O-demethylase oxidoreductase, at 145,392 to 146,336
_262p01350
PGA1_262p01360: PGA1_262p01360 - transcriptional regulator, LysR family, at 146,433 to 147,374
_262p01360
PGA1_262p01370: PGA1_262p01370 - putative dioxygenase, at 147,465 to 148,619
_262p01370
Position (kb) 146
147
148 Strain fitness (log2 ratio) -2
-1
0
1 at 145.619 kb on + strand, within PGA1_262p01350 at 146.347 kb on + strand at 146.459 kb on - strand at 146.459 kb on - strand at 146.498 kb on + strand at 146.597 kb on + strand, within PGA1_262p01360 at 146.597 kb on + strand, within PGA1_262p01360 at 146.597 kb on + strand, within PGA1_262p01360 at 146.682 kb on - strand, within PGA1_262p01360 at 146.775 kb on - strand, within PGA1_262p01360 at 146.849 kb on - strand, within PGA1_262p01360 at 146.849 kb on - strand, within PGA1_262p01360 at 146.862 kb on + strand, within PGA1_262p01360 at 146.870 kb on - strand, within PGA1_262p01360 at 147.213 kb on - strand, within PGA1_262p01360 at 147.495 kb on - strand at 147.503 kb on + strand at 147.533 kb on + strand at 147.533 kb on + strand at 147.541 kb on - strand at 147.628 kb on - strand, within PGA1_262p01370 at 147.690 kb on + strand, within PGA1_262p01370 at 147.712 kb on + strand, within PGA1_262p01370 at 147.778 kb on + strand, within PGA1_262p01370 at 147.786 kb on - strand, within PGA1_262p01370 at 147.846 kb on + strand, within PGA1_262p01370 at 147.859 kb on - strand, within PGA1_262p01370 at 147.893 kb on - strand, within PGA1_262p01370 at 148.068 kb on - strand, within PGA1_262p01370 at 148.111 kb on - strand, within PGA1_262p01370 at 148.119 kb on + strand, within PGA1_262p01370 at 148.121 kb on - strand, within PGA1_262p01370 at 148.177 kb on + strand, within PGA1_262p01370 at 148.192 kb on + strand, within PGA1_262p01370 at 148.304 kb on + strand, within PGA1_262p01370
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 145,619 + PGA1_262p01350 0.24 +1.7 146,347 + +0.3 146,459 - -0.6 146,459 - +1.2 146,498 + +0.5 146,597 + PGA1_262p01360 0.17 -1.9 146,597 + PGA1_262p01360 0.17 +0.7 146,597 + PGA1_262p01360 0.17 +0.4 146,682 - PGA1_262p01360 0.26 +0.5 146,775 - PGA1_262p01360 0.36 +0.8 146,849 - PGA1_262p01360 0.44 +0.9 146,849 - PGA1_262p01360 0.44 +0.3 146,862 + PGA1_262p01360 0.46 +0.2 146,870 - PGA1_262p01360 0.46 -0.1 147,213 - PGA1_262p01360 0.83 -0.3 147,495 - +0.1 147,503 + -0.6 147,533 + -0.1 147,533 + -0.1 147,541 - +0.4 147,628 - PGA1_262p01370 0.14 -1.1 147,690 + PGA1_262p01370 0.19 -0.2 147,712 + PGA1_262p01370 0.21 -0.1 147,778 + PGA1_262p01370 0.27 +0.3 147,786 - PGA1_262p01370 0.28 -0.4 147,846 + PGA1_262p01370 0.33 -0.6 147,859 - PGA1_262p01370 0.34 -0.7 147,893 - PGA1_262p01370 0.37 +0.6 148,068 - PGA1_262p01370 0.52 +0.1 148,111 - PGA1_262p01370 0.56 -0.3 148,119 + PGA1_262p01370 0.57 +1.2 148,121 - PGA1_262p01370 0.57 +0.9 148,177 + PGA1_262p01370 0.62 +0.5 148,192 + PGA1_262p01370 0.63 -0.3 148,304 + PGA1_262p01370 0.73 -0.6
Or see this region's nucleotide sequence