Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotides PGA1_262p01280 and PGA1_262p01290 are separated by 97 nucleotides PGA1_262p01290 and PGA1_262p01300 are separated by 156 nucleotides PGA1_262p01300 and PGA1_262p01310 are separated by 125 nucleotides
PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261
_262p01270
PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872
_262p01280
PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977
_262p01290
PGA1_262p01300: PGA1_262p01300 - Cupin domain., at 141,134 to 141,574
_262p01300
PGA1_262p01310: PGA1_262p01310 - putative flavin-containing monooxygenase, at 141,700 to 143,187
_262p01310
Position (kb) 139
140
141 Strain fitness (log2 ratio) -1
0
1
2 at 139.092 kb on - strand, within PGA1_262p01270 at 139.151 kb on + strand, within PGA1_262p01270 at 139.579 kb on + strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.770 kb on - strand, within PGA1_262p01280 at 140.074 kb on - strand, within PGA1_262p01290 at 140.079 kb on - strand, within PGA1_262p01290 at 140.152 kb on + strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.446 kb on + strand, within PGA1_262p01290 at 140.454 kb on - strand, within PGA1_262p01290 at 140.533 kb on - strand, within PGA1_262p01290 at 140.620 kb on - strand, within PGA1_262p01290 at 140.637 kb on + strand, within PGA1_262p01290 at 140.647 kb on + strand, within PGA1_262p01290 at 140.908 kb on + strand at 140.950 kb on - strand at 140.962 kb on + strand at 140.988 kb on + strand at 141.098 kb on - strand at 141.178 kb on + strand, within PGA1_262p01300 at 141.197 kb on - strand, within PGA1_262p01300 at 141.357 kb on + strand, within PGA1_262p01300 at 141.407 kb on + strand, within PGA1_262p01300 at 141.476 kb on - strand, within PGA1_262p01300 at 141.523 kb on + strand, within PGA1_262p01300 at 141.557 kb on + strand at 141.729 kb on - strand at 141.802 kb on - strand at 141.924 kb on + strand, within PGA1_262p01310 at 141.947 kb on - strand, within PGA1_262p01310
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 139,092 - PGA1_262p01270 0.78 +0.2 139,151 + PGA1_262p01270 0.85 +0.4 139,579 + PGA1_262p01280 0.52 +0.2 139,734 - PGA1_262p01280 0.77 -1.2 139,734 - PGA1_262p01280 0.77 +1.3 139,734 - PGA1_262p01280 0.77 -0.0 139,770 - PGA1_262p01280 0.83 +0.1 140,074 - PGA1_262p01290 0.10 +0.4 140,079 - PGA1_262p01290 0.11 +0.6 140,152 + PGA1_262p01290 0.18 +1.1 140,215 - PGA1_262p01290 0.24 +0.5 140,215 - PGA1_262p01290 0.24 +0.2 140,446 + PGA1_262p01290 0.47 +0.9 140,454 - PGA1_262p01290 0.48 -0.2 140,533 - PGA1_262p01290 0.56 -0.1 140,620 - PGA1_262p01290 0.64 +0.5 140,637 + PGA1_262p01290 0.66 -0.1 140,647 + PGA1_262p01290 0.67 -0.1 140,908 + +0.5 140,950 - -0.1 140,962 + -0.5 140,988 + +0.1 141,098 - -0.9 141,178 + PGA1_262p01300 0.10 +0.4 141,197 - PGA1_262p01300 0.14 +2.2 141,357 + PGA1_262p01300 0.51 +0.4 141,407 + PGA1_262p01300 0.62 -0.4 141,476 - PGA1_262p01300 0.78 +0.2 141,523 + PGA1_262p01300 0.88 -1.3 141,557 + +0.1 141,729 - +0.1 141,802 - +0.3 141,924 + PGA1_262p01310 0.15 +1.1 141,947 - PGA1_262p01310 0.17 +0.5
Or see this region's nucleotide sequence