Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01120

Experiment: m.b. Lomefloxacin 0.00078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01100 and PGA1_262p01110 are separated by 125 nucleotidesPGA1_262p01110 and PGA1_262p01120 are separated by 78 nucleotidesPGA1_262p01120 and PGA1_262p01130 are separated by 61 nucleotidesPGA1_262p01130 and PGA1_262p01140 are separated by 225 nucleotides PGA1_262p01100: PGA1_262p01100 - transposase, at 118,688 to 120,277 _262p01100 PGA1_262p01110: PGA1_262p01110 - hypothetical protein, at 120,403 to 120,828 _262p01110 PGA1_262p01120: PGA1_262p01120 - hypothetical protein, at 120,907 to 121,305 _262p01120 PGA1_262p01130: PGA1_262p01130 - hypothetical protein, at 121,367 to 122,032 _262p01130 PGA1_262p01140: PGA1_262p01140 - RTX toxins and related Ca2+-binding proteins, at 122,258 to 127,435 _262p01140 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 120.400 kb on + strandat 120.521 kb on + strand, within PGA1_262p01110at 120.539 kb on + strand, within PGA1_262p01110at 120.559 kb on + strand, within PGA1_262p01110at 120.567 kb on - strand, within PGA1_262p01110at 120.567 kb on - strand, within PGA1_262p01110at 120.618 kb on - strand, within PGA1_262p01110at 120.650 kb on + strand, within PGA1_262p01110at 120.658 kb on - strand, within PGA1_262p01110at 120.660 kb on + strand, within PGA1_262p01110at 120.667 kb on + strand, within PGA1_262p01110at 120.764 kb on + strand, within PGA1_262p01110at 120.889 kb on - strandat 120.913 kb on - strandat 121.021 kb on + strand, within PGA1_262p01120at 121.029 kb on - strand, within PGA1_262p01120at 121.093 kb on - strand, within PGA1_262p01120at 121.266 kb on + strandat 121.351 kb on + strandat 121.446 kb on + strand, within PGA1_262p01130at 121.584 kb on + strand, within PGA1_262p01130at 121.592 kb on - strand, within PGA1_262p01130at 121.765 kb on + strand, within PGA1_262p01130at 121.773 kb on - strand, within PGA1_262p01130at 121.990 kb on - strandat 122.052 kb on - strandat 122.096 kb on + strandat 122.101 kb on + strandat 122.125 kb on + strandat 122.133 kb on - strandat 122.198 kb on + strandat 122.287 kb on - strandat 122.288 kb on - strandat 122.292 kb on + strandat 122.292 kb on + strandat 122.292 kb on + strandat 122.292 kb on + strandat 122.292 kb on + strandat 122.294 kb on + strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.300 kb on - strandat 122.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM
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120,400 + +0.8
120,521 + PGA1_262p01110 0.28 -0.6
120,539 + PGA1_262p01110 0.32 +2.4
120,559 + PGA1_262p01110 0.37 +0.6
120,567 - PGA1_262p01110 0.38 -0.9
120,567 - PGA1_262p01110 0.38 +0.4
120,618 - PGA1_262p01110 0.50 +1.3
120,650 + PGA1_262p01110 0.58 +0.2
120,658 - PGA1_262p01110 0.60 +0.4
120,660 + PGA1_262p01110 0.60 +1.0
120,667 + PGA1_262p01110 0.62 -0.2
120,764 + PGA1_262p01110 0.85 -0.0
120,889 - +0.8
120,913 - +0.2
121,021 + PGA1_262p01120 0.29 +0.9
121,029 - PGA1_262p01120 0.31 -0.2
121,093 - PGA1_262p01120 0.47 +0.6
121,266 + +0.4
121,351 + +0.1
121,446 + PGA1_262p01130 0.12 +0.3
121,584 + PGA1_262p01130 0.33 +0.1
121,592 - PGA1_262p01130 0.34 -2.0
121,765 + PGA1_262p01130 0.60 -0.5
121,773 - PGA1_262p01130 0.61 +0.3
121,990 - +1.4
122,052 - -0.0
122,096 + -0.2
122,101 + +0.3
122,125 + -0.8
122,133 - -0.7
122,198 + +1.4
122,287 - +0.1
122,288 - +0.7
122,292 + -1.0
122,292 + +1.2
122,292 + +0.5
122,292 + -1.2
122,292 + -1.3
122,294 + +0.2
122,300 - +0.1
122,300 - -1.2
122,300 - +0.2
122,300 - -0.9
122,300 - +0.6
122,300 - -0.6
122,300 - -0.2
122,300 - -1.0
122,300 - +0.5
122,300 - -0.2
122,300 - +0.8
122,300 - +0.3
122,300 - +0.2
122,305 - +0.8

Or see this region's nucleotide sequence