Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c30890 and PGA1_c30900 are separated by 2 nucleotides
PGA1_c30890: PGA1_c30890 - putative HipA-like protein, at 3,225,523 to 3,226,749
_c30890
PGA1_c30900: PGA1_c30900 - hypothetical protein, at 3,226,752 to 3,227,063
_c30900
Position (kb)
3226
3227
3228 Strain fitness (log2 ratio)
-2
-1
0
1 at 3225.752 kb on - strand, within PGA1_c30890 at 3225.853 kb on - strand, within PGA1_c30890 at 3225.863 kb on + strand, within PGA1_c30890 at 3225.883 kb on + strand, within PGA1_c30890 at 3225.905 kb on - strand, within PGA1_c30890 at 3226.052 kb on + strand, within PGA1_c30890 at 3226.052 kb on + strand, within PGA1_c30890 at 3226.055 kb on - strand, within PGA1_c30890 at 3226.055 kb on - strand, within PGA1_c30890 at 3226.059 kb on + strand, within PGA1_c30890 at 3226.062 kb on + strand, within PGA1_c30890 at 3226.067 kb on + strand, within PGA1_c30890 at 3226.067 kb on + strand, within PGA1_c30890 at 3226.075 kb on - strand, within PGA1_c30890 at 3226.119 kb on - strand, within PGA1_c30890 at 3226.178 kb on - strand, within PGA1_c30890 at 3226.299 kb on + strand, within PGA1_c30890 at 3226.312 kb on + strand, within PGA1_c30890 at 3226.320 kb on - strand, within PGA1_c30890 at 3226.347 kb on + strand, within PGA1_c30890 at 3226.383 kb on + strand, within PGA1_c30890 at 3226.389 kb on - strand, within PGA1_c30890 at 3226.391 kb on + strand, within PGA1_c30890 at 3226.399 kb on - strand, within PGA1_c30890 at 3226.403 kb on - strand, within PGA1_c30890 at 3226.414 kb on - strand, within PGA1_c30890 at 3226.429 kb on + strand, within PGA1_c30890 at 3226.503 kb on + strand, within PGA1_c30890 at 3226.528 kb on + strand, within PGA1_c30890 at 3226.543 kb on - strand, within PGA1_c30890 at 3226.544 kb on - strand, within PGA1_c30890 at 3226.592 kb on + strand, within PGA1_c30890 at 3226.600 kb on - strand, within PGA1_c30890 at 3226.600 kb on - strand, within PGA1_c30890 at 3226.649 kb on - strand at 3226.684 kb on + strand at 3226.689 kb on + strand at 3226.751 kb on + strand at 3226.828 kb on + strand, within PGA1_c30900 at 3226.836 kb on - strand, within PGA1_c30900 at 3226.850 kb on - strand, within PGA1_c30900 at 3226.930 kb on - strand, within PGA1_c30900 at 3226.930 kb on - strand, within PGA1_c30900 at 3226.942 kb on + strand, within PGA1_c30900 at 3226.965 kb on + strand, within PGA1_c30900 at 3226.976 kb on + strand, within PGA1_c30900 at 3227.051 kb on + strand at 3227.051 kb on + strand at 3227.059 kb on - strand at 3227.059 kb on - strand at 3227.059 kb on - strand at 3227.161 kb on + strand at 3227.199 kb on - strand at 3227.213 kb on - strand at 3227.228 kb on + strand at 3227.228 kb on + strand at 3227.235 kb on + strand at 3227.236 kb on - strand at 3227.243 kb on - strand at 3227.243 kb on - strand at 3227.248 kb on - strand at 3227.248 kb on - strand at 3227.288 kb on + strand at 3227.288 kb on + strand at 3227.288 kb on + strand at 3227.288 kb on + strand at 3227.290 kb on + strand at 3227.294 kb on - strand at 3227.294 kb on - strand at 3227.294 kb on - strand at 3227.294 kb on - strand at 3227.315 kb on - strand at 3227.353 kb on + strand at 3227.397 kb on - strand at 3227.400 kb on + strand at 3227.408 kb on - strand at 3227.475 kb on + strand at 3227.483 kb on - strand at 3227.483 kb on - strand at 3227.483 kb on - strand at 3227.485 kb on + strand at 3227.493 kb on - strand at 3227.497 kb on - strand at 3227.502 kb on - strand at 3227.504 kb on + strand at 3227.517 kb on + strand at 3227.520 kb on + strand at 3227.520 kb on - strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.522 kb on + strand at 3227.528 kb on - strand at 3227.530 kb on - strand at 3227.537 kb on + strand at 3227.577 kb on + strand at 3227.589 kb on + strand at 3227.603 kb on - strand at 3227.682 kb on + strand at 3227.685 kb on - strand at 3227.696 kb on - strand at 3227.703 kb on + strand at 3227.717 kb on - strand at 3227.758 kb on + strand at 3227.763 kb on + strand at 3227.783 kb on + strand at 3227.798 kb on - strand at 3227.812 kb on - strand at 3227.817 kb on - strand at 3227.820 kb on + strand at 3227.836 kb on + strand at 3227.853 kb on + strand at 3227.917 kb on - strand at 3227.924 kb on - strand at 3227.926 kb on + strand at 3227.975 kb on + strand at 3228.002 kb on + strand at 3228.006 kb on + strand at 3228.025 kb on - strand at 3228.030 kb on + strand at 3228.030 kb on + strand at 3228.032 kb on - strand at 3228.040 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 3,225,752 - PGA1_c30890 0.19 +1.4 3,225,853 - PGA1_c30890 0.27 -0.0 3,225,863 + PGA1_c30890 0.28 +0.1 3,225,883 + PGA1_c30890 0.29 +0.2 3,225,905 - PGA1_c30890 0.31 +0.4 3,226,052 + PGA1_c30890 0.43 -0.4 3,226,052 + PGA1_c30890 0.43 +0.5 3,226,055 - PGA1_c30890 0.43 +0.5 3,226,055 - PGA1_c30890 0.43 +0.5 3,226,059 + PGA1_c30890 0.44 -0.9 3,226,062 + PGA1_c30890 0.44 +0.4 3,226,067 + PGA1_c30890 0.44 +0.4 3,226,067 + PGA1_c30890 0.44 +0.7 3,226,075 - PGA1_c30890 0.45 -1.6 3,226,119 - PGA1_c30890 0.49 +0.5 3,226,178 - PGA1_c30890 0.53 +0.0 3,226,299 + PGA1_c30890 0.63 -0.1 3,226,312 + PGA1_c30890 0.64 -0.3 3,226,320 - PGA1_c30890 0.65 -0.3 3,226,347 + PGA1_c30890 0.67 +0.6 3,226,383 + PGA1_c30890 0.70 +0.0 3,226,389 - PGA1_c30890 0.71 -0.2 3,226,391 + PGA1_c30890 0.71 +0.7 3,226,399 - PGA1_c30890 0.71 -0.2 3,226,403 - PGA1_c30890 0.72 +0.7 3,226,414 - PGA1_c30890 0.73 -0.2 3,226,429 + PGA1_c30890 0.74 -0.1 3,226,503 + PGA1_c30890 0.80 +0.4 3,226,528 + PGA1_c30890 0.82 -0.0 3,226,543 - PGA1_c30890 0.83 +0.5 3,226,544 - PGA1_c30890 0.83 +0.8 3,226,592 + PGA1_c30890 0.87 -0.7 3,226,600 - PGA1_c30890 0.88 +0.0 3,226,600 - PGA1_c30890 0.88 +0.6 3,226,649 - -1.5 3,226,684 + +0.2 3,226,689 + +1.0 3,226,751 + -1.1 3,226,828 + PGA1_c30900 0.24 +0.4 3,226,836 - PGA1_c30900 0.27 +0.1 3,226,850 - PGA1_c30900 0.31 -1.1 3,226,930 - PGA1_c30900 0.57 -0.1 3,226,930 - PGA1_c30900 0.57 +0.9 3,226,942 + PGA1_c30900 0.61 +0.9 3,226,965 + PGA1_c30900 0.68 +1.3 3,226,976 + PGA1_c30900 0.72 +0.5 3,227,051 + +1.4 3,227,051 + +0.5 3,227,059 - +0.3 3,227,059 - +0.1 3,227,059 - +0.2 3,227,161 + -0.7 3,227,199 - +0.5 3,227,213 - +0.5 3,227,228 + -0.5 3,227,228 + -1.9 3,227,235 + +0.8 3,227,236 - -0.3 3,227,243 - -0.1 3,227,243 - +0.1 3,227,248 - -0.8 3,227,248 - -2.0 3,227,288 + -1.0 3,227,288 + -1.2 3,227,288 + -1.0 3,227,288 + -0.3 3,227,290 + -1.0 3,227,294 - -0.4 3,227,294 - -0.2 3,227,294 - +0.3 3,227,294 - -0.0 3,227,315 - -0.1 3,227,353 + -0.3 3,227,397 - -0.4 3,227,400 + -0.2 3,227,408 - -0.2 3,227,475 + -0.0 3,227,483 - -0.1 3,227,483 - -0.4 3,227,483 - +0.4 3,227,485 + -0.3 3,227,493 - +0.0 3,227,497 - +0.6 3,227,502 - -1.2 3,227,504 + +0.0 3,227,517 + -0.4 3,227,520 + -0.4 3,227,520 - -2.4 3,227,522 + -0.2 3,227,522 + -0.3 3,227,522 + -0.9 3,227,522 + +0.5 3,227,522 + +0.4 3,227,522 + -0.4 3,227,522 + -0.2 3,227,528 - -0.9 3,227,530 - -0.2 3,227,537 + +0.7 3,227,577 + -0.8 3,227,589 + -0.2 3,227,603 - -1.2 3,227,682 + +0.8 3,227,685 - -0.6 3,227,696 - +0.8 3,227,703 + +0.3 3,227,717 - -0.1 3,227,758 + +0.3 3,227,763 + -0.1 3,227,783 + +0.3 3,227,798 - +0.2 3,227,812 - +0.6 3,227,817 - -0.5 3,227,820 + +1.1 3,227,836 + -1.3 3,227,853 + -0.6 3,227,917 - -0.3 3,227,924 - -0.7 3,227,926 + -0.1 3,227,975 + +0.8 3,228,002 + -0.2 3,228,006 + +0.5 3,228,025 - -0.4 3,228,030 + +0.7 3,228,030 + -1.0 3,228,032 - -0.3 3,228,040 + -0.5
Or see this region's nucleotide sequence