Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15240 and PGA1_c15250 are separated by 64 nucleotides PGA1_c15250 and PGA1_c15260 are separated by 204 nucleotides PGA1_c15260 and PGA1_c15270 are separated by 212 nucleotides
PGA1_c15240: PGA1_c15240 - two-component system histidine kinase / response regulator, at 1,586,129 to 1,588,444
_c15240
PGA1_c15250: PGA1_c15250 - hypothetical protein, at 1,588,509 to 1,589,102
_c15250
PGA1_c15260: PGA1_c15260 - protein recA (recombinase A), at 1,589,307 to 1,590,374
_c15260
PGA1_c15270: PGA1_c15270 - alanyl-tRNA synthetase AlaS, at 1,590,587 to 1,593,238
_c15270
Position (kb)
1589
1590
1591 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1588.395 kb on - strand at 1588.395 kb on - strand at 1588.422 kb on - strand at 1588.422 kb on - strand at 1588.446 kb on - strand at 1588.490 kb on - strand at 1588.503 kb on - strand at 1588.512 kb on + strand at 1588.512 kb on + strand at 1588.512 kb on + strand at 1588.525 kb on - strand at 1588.525 kb on - strand at 1588.525 kb on - strand at 1588.656 kb on + strand, within PGA1_c15250 at 1588.967 kb on + strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1588.973 kb on - strand, within PGA1_c15250 at 1589.030 kb on - strand, within PGA1_c15250 at 1589.142 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.152 kb on + strand at 1589.160 kb on - strand at 1589.160 kb on - strand at 1589.160 kb on - strand at 1589.160 kb on - strand at 1589.160 kb on - strand at 1589.161 kb on - strand at 1589.174 kb on + strand at 1589.179 kb on + strand at 1589.179 kb on + strand at 1589.182 kb on - strand at 1589.290 kb on + strand at 1589.583 kb on + strand, within PGA1_c15260 at 1589.693 kb on + strand, within PGA1_c15260 at 1589.943 kb on + strand, within PGA1_c15260 at 1590.068 kb on + strand, within PGA1_c15260 at 1590.234 kb on + strand, within PGA1_c15260 at 1590.234 kb on + strand, within PGA1_c15260 at 1590.308 kb on - strand at 1590.315 kb on + strand at 1590.397 kb on + strand at 1590.515 kb on + strand at 1590.515 kb on + strand at 1590.515 kb on + strand at 1590.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 1,588,395 - -0.5 1,588,395 - +0.4 1,588,422 - -0.4 1,588,422 - -0.1 1,588,446 - +0.5 1,588,490 - -0.6 1,588,503 - -1.8 1,588,512 + +0.4 1,588,512 + -0.3 1,588,512 + -0.7 1,588,525 - +0.1 1,588,525 - +0.4 1,588,525 - +0.3 1,588,656 + PGA1_c15250 0.25 -0.4 1,588,967 + PGA1_c15250 0.77 +0.2 1,588,973 - PGA1_c15250 0.78 -1.6 1,588,973 - PGA1_c15250 0.78 -0.0 1,588,973 - PGA1_c15250 0.78 +0.1 1,588,973 - PGA1_c15250 0.78 -0.0 1,588,973 - PGA1_c15250 0.78 +0.0 1,589,030 - PGA1_c15250 0.88 -0.2 1,589,142 + +0.8 1,589,152 + -0.5 1,589,152 + +0.4 1,589,152 + +0.2 1,589,152 + +0.5 1,589,152 + +0.1 1,589,152 + +0.3 1,589,152 + +0.6 1,589,160 - +0.5 1,589,160 - +0.7 1,589,160 - +0.4 1,589,160 - -1.5 1,589,160 - +1.8 1,589,161 - +0.2 1,589,174 + +0.1 1,589,179 + -0.0 1,589,179 + +0.7 1,589,182 - +0.4 1,589,290 + -1.3 1,589,583 + PGA1_c15260 0.26 -1.9 1,589,693 + PGA1_c15260 0.36 -2.0 1,589,943 + PGA1_c15260 0.60 -1.5 1,590,068 + PGA1_c15260 0.71 -0.9 1,590,234 + PGA1_c15260 0.87 -2.2 1,590,234 + PGA1_c15260 0.87 -3.9 1,590,308 - -1.6 1,590,315 + -1.3 1,590,397 + -0.3 1,590,515 + -0.0 1,590,515 + +0.7 1,590,515 + -0.3 1,590,518 - +0.6
Or see this region's nucleotide sequence