Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15260

Experiment: m.b. Lomefloxacin 0.00078125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c15240 and PGA1_c15250 are separated by 64 nucleotidesPGA1_c15250 and PGA1_c15260 are separated by 204 nucleotidesPGA1_c15260 and PGA1_c15270 are separated by 212 nucleotides PGA1_c15240: PGA1_c15240 - two-component system histidine kinase / response regulator, at 1,586,129 to 1,588,444 _c15240 PGA1_c15250: PGA1_c15250 - hypothetical protein, at 1,588,509 to 1,589,102 _c15250 PGA1_c15260: PGA1_c15260 - protein recA (recombinase A), at 1,589,307 to 1,590,374 _c15260 PGA1_c15270: PGA1_c15270 - alanyl-tRNA synthetase AlaS, at 1,590,587 to 1,593,238 _c15270 Position (kb) 1589 1590 1591Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1588.395 kb on - strandat 1588.395 kb on - strandat 1588.422 kb on - strandat 1588.422 kb on - strandat 1588.446 kb on - strandat 1588.490 kb on - strandat 1588.503 kb on - strandat 1588.512 kb on + strandat 1588.512 kb on + strandat 1588.512 kb on + strandat 1588.525 kb on - strandat 1588.525 kb on - strandat 1588.525 kb on - strandat 1588.656 kb on + strand, within PGA1_c15250at 1588.967 kb on + strand, within PGA1_c15250at 1588.973 kb on - strand, within PGA1_c15250at 1588.973 kb on - strand, within PGA1_c15250at 1588.973 kb on - strand, within PGA1_c15250at 1588.973 kb on - strand, within PGA1_c15250at 1588.973 kb on - strand, within PGA1_c15250at 1589.030 kb on - strand, within PGA1_c15250at 1589.142 kb on + strandat 1589.152 kb on + strandat 1589.152 kb on + strandat 1589.152 kb on + strandat 1589.152 kb on + strandat 1589.152 kb on + strandat 1589.152 kb on + strandat 1589.152 kb on + strandat 1589.160 kb on - strandat 1589.160 kb on - strandat 1589.160 kb on - strandat 1589.160 kb on - strandat 1589.160 kb on - strandat 1589.161 kb on - strandat 1589.174 kb on + strandat 1589.179 kb on + strandat 1589.179 kb on + strandat 1589.182 kb on - strandat 1589.290 kb on + strandat 1589.583 kb on + strand, within PGA1_c15260at 1589.693 kb on + strand, within PGA1_c15260at 1589.943 kb on + strand, within PGA1_c15260at 1590.068 kb on + strand, within PGA1_c15260at 1590.234 kb on + strand, within PGA1_c15260at 1590.234 kb on + strand, within PGA1_c15260at 1590.308 kb on - strandat 1590.315 kb on + strandat 1590.397 kb on + strandat 1590.515 kb on + strandat 1590.515 kb on + strandat 1590.515 kb on + strandat 1590.518 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM
remove
1,588,395 - -0.5
1,588,395 - +0.4
1,588,422 - -0.4
1,588,422 - -0.1
1,588,446 - +0.5
1,588,490 - -0.6
1,588,503 - -1.8
1,588,512 + +0.4
1,588,512 + -0.3
1,588,512 + -0.7
1,588,525 - +0.1
1,588,525 - +0.4
1,588,525 - +0.3
1,588,656 + PGA1_c15250 0.25 -0.4
1,588,967 + PGA1_c15250 0.77 +0.2
1,588,973 - PGA1_c15250 0.78 -1.6
1,588,973 - PGA1_c15250 0.78 -0.0
1,588,973 - PGA1_c15250 0.78 +0.1
1,588,973 - PGA1_c15250 0.78 -0.0
1,588,973 - PGA1_c15250 0.78 +0.0
1,589,030 - PGA1_c15250 0.88 -0.2
1,589,142 + +0.8
1,589,152 + -0.5
1,589,152 + +0.4
1,589,152 + +0.2
1,589,152 + +0.5
1,589,152 + +0.1
1,589,152 + +0.3
1,589,152 + +0.6
1,589,160 - +0.5
1,589,160 - +0.7
1,589,160 - +0.4
1,589,160 - -1.5
1,589,160 - +1.8
1,589,161 - +0.2
1,589,174 + +0.1
1,589,179 + -0.0
1,589,179 + +0.7
1,589,182 - +0.4
1,589,290 + -1.3
1,589,583 + PGA1_c15260 0.26 -1.9
1,589,693 + PGA1_c15260 0.36 -2.0
1,589,943 + PGA1_c15260 0.60 -1.5
1,590,068 + PGA1_c15260 0.71 -0.9
1,590,234 + PGA1_c15260 0.87 -2.2
1,590,234 + PGA1_c15260 0.87 -3.9
1,590,308 - -1.6
1,590,315 + -1.3
1,590,397 + -0.3
1,590,515 + -0.0
1,590,515 + +0.7
1,590,515 + -0.3
1,590,518 - +0.6

Or see this region's nucleotide sequence