Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15100

Experiment: m.b. Lomefloxacin 0.00078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15080 and PGA1_c15090 are separated by 68 nucleotidesPGA1_c15090 and PGA1_c15100 are separated by 207 nucleotidesPGA1_c15100 and PGA1_c15110 are separated by 91 nucleotides PGA1_c15080: PGA1_c15080 - Hydrogenase/urease accessory protein, at 1,567,019 to 1,568,227 _c15080 PGA1_c15090: PGA1_c15090 - putative thiamine monophosphate synthase, at 1,568,296 to 1,568,931 _c15090 PGA1_c15100: PGA1_c15100 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 1,569,139 to 1,569,885 _c15100 PGA1_c15110: PGA1_c15110 - heme A synthase CtaA, at 1,569,977 to 1,571,125 _c15110 Position (kb) 1569 1570Strain fitness (log2 ratio) -1 0 1at 1568.178 kb on + strandat 1568.183 kb on + strandat 1568.203 kb on - strandat 1568.203 kb on - strandat 1568.226 kb on + strandat 1568.226 kb on + strandat 1568.280 kb on - strandat 1568.285 kb on - strandat 1568.990 kb on + strandat 1569.083 kb on + strandat 1569.083 kb on + strandat 1569.091 kb on + strandat 1569.091 kb on + strandat 1569.091 kb on - strandat 1569.099 kb on - strandat 1569.101 kb on + strandat 1569.106 kb on + strandat 1569.108 kb on + strandat 1569.164 kb on + strandat 1569.279 kb on + strand, within PGA1_c15100at 1569.287 kb on - strand, within PGA1_c15100at 1569.425 kb on - strand, within PGA1_c15100at 1569.469 kb on + strand, within PGA1_c15100at 1569.469 kb on + strand, within PGA1_c15100at 1569.587 kb on - strand, within PGA1_c15100at 1569.587 kb on - strand, within PGA1_c15100at 1569.691 kb on + strand, within PGA1_c15100at 1569.779 kb on - strand, within PGA1_c15100at 1569.808 kb on + strand, within PGA1_c15100at 1569.818 kb on + strandat 1569.892 kb on + strandat 1569.910 kb on - strandat 1569.913 kb on + strandat 1569.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM
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1,568,178 + -0.4
1,568,183 + -0.2
1,568,203 - +0.0
1,568,203 - -0.9
1,568,226 + +1.3
1,568,226 + -0.6
1,568,280 - +0.4
1,568,285 - +0.1
1,568,990 + -0.2
1,569,083 + +0.3
1,569,083 + +0.4
1,569,091 + -0.6
1,569,091 + +0.4
1,569,091 - +0.2
1,569,099 - +1.0
1,569,101 + +0.1
1,569,106 + +0.8
1,569,108 + -0.2
1,569,164 + +1.1
1,569,279 + PGA1_c15100 0.19 -0.6
1,569,287 - PGA1_c15100 0.20 -0.8
1,569,425 - PGA1_c15100 0.38 -0.3
1,569,469 + PGA1_c15100 0.44 +0.8
1,569,469 + PGA1_c15100 0.44 +0.3
1,569,587 - PGA1_c15100 0.60 +0.1
1,569,587 - PGA1_c15100 0.60 +1.4
1,569,691 + PGA1_c15100 0.74 -0.6
1,569,779 - PGA1_c15100 0.86 +1.2
1,569,808 + PGA1_c15100 0.90 +0.4
1,569,818 + +0.1
1,569,892 + +0.0
1,569,910 - -0.5
1,569,913 + -0.7
1,569,923 + -0.0

Or see this region's nucleotide sequence