Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13530

Experiment: m.b. Lomefloxacin 0.00078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13520 and PGA1_c13530 are separated by 215 nucleotidesPGA1_c13530 and PGA1_c13540 are separated by 261 nucleotidesPGA1_c13540 and PGA1_c13550 are separated by 135 nucleotides PGA1_c13520: PGA1_c13520 - fumarate hydratase class II, at 1,397,860 to 1,399,254 _c13520 PGA1_c13530: PGA1_c13530 - hypothetical protein, at 1,399,470 to 1,400,111 _c13530 PGA1_c13540: PGA1_c13540 - Uncharacterized protein conserved in bacteria, at 1,400,373 to 1,400,849 _c13540 PGA1_c13550: PGA1_c13550 - putative chromate transporter, at 1,400,985 to 1,402,283 _c13550 Position (kb) 1399 1400 1401Strain fitness (log2 ratio) -2 -1 0 1at 1399.367 kb on + strandat 1399.369 kb on + strandat 1399.369 kb on + strandat 1399.369 kb on + strandat 1399.376 kb on - strandat 1399.377 kb on - strandat 1399.377 kb on - strandat 1399.404 kb on + strandat 1399.412 kb on - strandat 1399.460 kb on + strandat 1399.677 kb on + strand, within PGA1_c13530at 1399.682 kb on + strand, within PGA1_c13530at 1399.699 kb on + strand, within PGA1_c13530at 1399.699 kb on + strand, within PGA1_c13530at 1399.699 kb on + strand, within PGA1_c13530at 1399.699 kb on + strand, within PGA1_c13530at 1399.707 kb on - strand, within PGA1_c13530at 1399.739 kb on + strand, within PGA1_c13530at 1399.783 kb on + strand, within PGA1_c13530at 1399.783 kb on + strand, within PGA1_c13530at 1399.889 kb on - strand, within PGA1_c13530at 1399.904 kb on - strand, within PGA1_c13530at 1399.918 kb on - strand, within PGA1_c13530at 1399.929 kb on + strand, within PGA1_c13530at 1399.948 kb on + strand, within PGA1_c13530at 1400.030 kb on + strand, within PGA1_c13530at 1400.038 kb on - strand, within PGA1_c13530at 1400.038 kb on - strand, within PGA1_c13530at 1400.053 kb on - strandat 1400.058 kb on - strandat 1400.060 kb on + strandat 1400.092 kb on - strandat 1400.268 kb on + strandat 1400.268 kb on + strandat 1400.276 kb on - strandat 1400.318 kb on - strandat 1400.334 kb on - strandat 1400.358 kb on + strandat 1400.544 kb on + strand, within PGA1_c13540at 1400.552 kb on - strand, within PGA1_c13540at 1400.584 kb on - strand, within PGA1_c13540at 1400.635 kb on - strand, within PGA1_c13540at 1400.677 kb on - strand, within PGA1_c13540at 1400.688 kb on - strand, within PGA1_c13540at 1400.724 kb on + strand, within PGA1_c13540at 1400.768 kb on + strand, within PGA1_c13540at 1400.776 kb on - strand, within PGA1_c13540at 1400.776 kb on - strand, within PGA1_c13540at 1400.778 kb on + strand, within PGA1_c13540at 1400.781 kb on - strand, within PGA1_c13540at 1400.783 kb on + strand, within PGA1_c13540at 1400.783 kb on + strand, within PGA1_c13540at 1400.786 kb on - strand, within PGA1_c13540at 1400.786 kb on - strand, within PGA1_c13540at 1400.786 kb on - strand, within PGA1_c13540at 1400.786 kb on - strand, within PGA1_c13540at 1400.793 kb on + strand, within PGA1_c13540at 1400.793 kb on + strand, within PGA1_c13540at 1400.793 kb on + strand, within PGA1_c13540at 1400.793 kb on + strand, within PGA1_c13540at 1400.793 kb on + strand, within PGA1_c13540at 1400.793 kb on + strand, within PGA1_c13540at 1400.801 kb on - strand, within PGA1_c13540at 1400.801 kb on - strand, within PGA1_c13540at 1400.801 kb on - strand, within PGA1_c13540at 1400.801 kb on - strand, within PGA1_c13540at 1400.806 kb on - strandat 1400.806 kb on - strandat 1400.851 kb on + strandat 1400.856 kb on + strandat 1400.857 kb on + strandat 1400.857 kb on + strandat 1400.858 kb on + strandat 1400.858 kb on + strandat 1400.858 kb on + strandat 1400.858 kb on + strandat 1400.858 kb on + strandat 1400.864 kb on + strandat 1400.865 kb on - strandat 1400.865 kb on - strandat 1400.866 kb on - strandat 1400.914 kb on + strandat 1400.957 kb on - strandat 1400.961 kb on + strandat 1400.963 kb on - strandat 1400.963 kb on - strandat 1400.983 kb on + strandat 1400.983 kb on + strandat 1400.986 kb on + strandat 1400.991 kb on - strandat 1400.999 kb on - strandat 1400.999 kb on - strandat 1401.016 kb on - strandat 1401.060 kb on - strandat 1401.079 kb on + strandat 1401.104 kb on + strandat 1401.104 kb on + strandat 1401.104 kb on + strandat 1401.104 kb on + strandat 1401.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM
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1,399,367 + -0.7
1,399,369 + -1.0
1,399,369 + -0.0
1,399,369 + -0.6
1,399,376 - +0.5
1,399,377 - +0.2
1,399,377 - -0.1
1,399,404 + +0.5
1,399,412 - +0.8
1,399,460 + -0.1
1,399,677 + PGA1_c13530 0.32 -0.1
1,399,682 + PGA1_c13530 0.33 -0.4
1,399,699 + PGA1_c13530 0.36 +0.1
1,399,699 + PGA1_c13530 0.36 +1.0
1,399,699 + PGA1_c13530 0.36 -0.2
1,399,699 + PGA1_c13530 0.36 +0.3
1,399,707 - PGA1_c13530 0.37 +0.4
1,399,739 + PGA1_c13530 0.42 +0.1
1,399,783 + PGA1_c13530 0.49 +0.3
1,399,783 + PGA1_c13530 0.49 -0.9
1,399,889 - PGA1_c13530 0.65 +0.3
1,399,904 - PGA1_c13530 0.68 +0.7
1,399,918 - PGA1_c13530 0.70 -2.6
1,399,929 + PGA1_c13530 0.71 +1.0
1,399,948 + PGA1_c13530 0.74 +1.6
1,400,030 + PGA1_c13530 0.87 +0.7
1,400,038 - PGA1_c13530 0.88 +0.5
1,400,038 - PGA1_c13530 0.88 -0.3
1,400,053 - +0.8
1,400,058 - -0.9
1,400,060 + -0.0
1,400,092 - -0.4
1,400,268 + +0.1
1,400,268 + +0.8
1,400,276 - +0.1
1,400,318 - +0.7
1,400,334 - +0.2
1,400,358 + -0.1
1,400,544 + PGA1_c13540 0.36 +0.1
1,400,552 - PGA1_c13540 0.38 +0.4
1,400,584 - PGA1_c13540 0.44 -1.7
1,400,635 - PGA1_c13540 0.55 -0.7
1,400,677 - PGA1_c13540 0.64 +0.8
1,400,688 - PGA1_c13540 0.66 -0.1
1,400,724 + PGA1_c13540 0.74 +0.7
1,400,768 + PGA1_c13540 0.83 -0.2
1,400,776 - PGA1_c13540 0.84 +1.1
1,400,776 - PGA1_c13540 0.84 +0.2
1,400,778 + PGA1_c13540 0.85 -0.2
1,400,781 - PGA1_c13540 0.86 +0.0
1,400,783 + PGA1_c13540 0.86 -0.1
1,400,783 + PGA1_c13540 0.86 +0.1
1,400,786 - PGA1_c13540 0.87 -0.7
1,400,786 - PGA1_c13540 0.87 -0.2
1,400,786 - PGA1_c13540 0.87 +0.3
1,400,786 - PGA1_c13540 0.87 -1.0
1,400,793 + PGA1_c13540 0.88 -0.6
1,400,793 + PGA1_c13540 0.88 +0.9
1,400,793 + PGA1_c13540 0.88 -0.2
1,400,793 + PGA1_c13540 0.88 -1.0
1,400,793 + PGA1_c13540 0.88 -0.5
1,400,793 + PGA1_c13540 0.88 -0.5
1,400,801 - PGA1_c13540 0.90 +0.0
1,400,801 - PGA1_c13540 0.90 +0.0
1,400,801 - PGA1_c13540 0.90 -0.2
1,400,801 - PGA1_c13540 0.90 +0.6
1,400,806 - +0.7
1,400,806 - -0.1
1,400,851 + +0.3
1,400,856 + -0.5
1,400,857 + -0.9
1,400,857 + -1.0
1,400,858 + +0.3
1,400,858 + -1.9
1,400,858 + +1.7
1,400,858 + +0.0
1,400,858 + +0.4
1,400,864 + +0.6
1,400,865 - +0.4
1,400,865 - +0.1
1,400,866 - -1.0
1,400,914 + -0.3
1,400,957 - +0.5
1,400,961 + +0.3
1,400,963 - -0.7
1,400,963 - +1.1
1,400,983 + -0.1
1,400,983 + -0.3
1,400,986 + -0.2
1,400,991 - -0.2
1,400,999 - +0.6
1,400,999 - +0.2
1,401,016 - -0.7
1,401,060 - -0.7
1,401,079 + +0.8
1,401,104 + -0.0
1,401,104 + +0.0
1,401,104 + +0.3
1,401,104 + -0.6
1,401,104 + +0.3

Or see this region's nucleotide sequence