Experiment: m.b. Lomefloxacin 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10720 and PGA1_c10730 are separated by 126 nucleotides PGA1_c10730 and PGA1_c10740 are separated by 48 nucleotides PGA1_c10740 and PGA1_c10750 are separated by 108 nucleotides
PGA1_c10720: PGA1_c10720 - putative sec-independent protein translocase protein TatC, at 1,108,408 to 1,109,376
_c10720
PGA1_c10730: PGA1_c10730 - ribose-5-phosphate isomerase B, at 1,109,503 to 1,109,958
_c10730
PGA1_c10740: PGA1_c10740 - Predicted ATPase (AAA+ superfamily), at 1,110,007 to 1,110,849
_c10740
PGA1_c10750: PGA1_c10750 - putative peptidoglycan binding peptidase, at 1,110,958 to 1,112,184
_c10750
Position (kb)
1110
1111 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1109.331 kb on - strand at 1109.422 kb on + strand at 1109.463 kb on + strand at 1109.530 kb on + strand at 1109.560 kb on - strand, within PGA1_c10730 at 1109.562 kb on + strand, within PGA1_c10730 at 1109.570 kb on - strand, within PGA1_c10730 at 1109.597 kb on + strand, within PGA1_c10730 at 1109.605 kb on - strand, within PGA1_c10730 at 1109.921 kb on + strand at 1109.961 kb on + strand at 1109.968 kb on + strand at 1110.014 kb on + strand at 1110.019 kb on + strand at 1110.019 kb on + strand at 1110.026 kb on + strand at 1110.027 kb on - strand at 1110.066 kb on + strand at 1110.125 kb on + strand, within PGA1_c10740 at 1110.171 kb on + strand, within PGA1_c10740 at 1110.179 kb on - strand, within PGA1_c10740 at 1110.190 kb on + strand, within PGA1_c10740 at 1110.230 kb on + strand, within PGA1_c10740 at 1110.230 kb on + strand, within PGA1_c10740 at 1110.411 kb on - strand, within PGA1_c10740 at 1110.417 kb on - strand, within PGA1_c10740 at 1110.430 kb on + strand, within PGA1_c10740 at 1110.433 kb on - strand, within PGA1_c10740 at 1110.451 kb on + strand, within PGA1_c10740 at 1110.478 kb on + strand, within PGA1_c10740 at 1110.504 kb on + strand, within PGA1_c10740 at 1110.519 kb on + strand, within PGA1_c10740 at 1110.522 kb on - strand, within PGA1_c10740 at 1110.586 kb on + strand, within PGA1_c10740 at 1110.766 kb on + strand at 1110.812 kb on - strand at 1110.831 kb on - strand at 1110.841 kb on - strand at 1110.885 kb on - strand at 1110.940 kb on + strand at 1110.948 kb on - strand at 1110.965 kb on + strand at 1111.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.00078125 mM remove 1,109,331 - -0.1 1,109,422 + -0.3 1,109,463 + -0.8 1,109,530 + -0.1 1,109,560 - PGA1_c10730 0.12 -0.1 1,109,562 + PGA1_c10730 0.13 +1.0 1,109,570 - PGA1_c10730 0.15 +0.2 1,109,597 + PGA1_c10730 0.21 +0.8 1,109,605 - PGA1_c10730 0.22 +0.4 1,109,921 + -1.8 1,109,961 + -0.9 1,109,968 + +0.3 1,110,014 + -0.3 1,110,019 + +0.9 1,110,019 + +0.0 1,110,026 + +0.1 1,110,027 - -1.4 1,110,066 + -1.4 1,110,125 + PGA1_c10740 0.14 +0.2 1,110,171 + PGA1_c10740 0.19 +0.3 1,110,179 - PGA1_c10740 0.20 +0.6 1,110,190 + PGA1_c10740 0.22 +2.1 1,110,230 + PGA1_c10740 0.26 +0.4 1,110,230 + PGA1_c10740 0.26 +0.3 1,110,411 - PGA1_c10740 0.48 +0.6 1,110,417 - PGA1_c10740 0.49 +0.3 1,110,430 + PGA1_c10740 0.50 +1.1 1,110,433 - PGA1_c10740 0.51 -0.4 1,110,451 + PGA1_c10740 0.53 +0.1 1,110,478 + PGA1_c10740 0.56 +0.1 1,110,504 + PGA1_c10740 0.59 -1.1 1,110,519 + PGA1_c10740 0.61 +1.0 1,110,522 - PGA1_c10740 0.61 +0.1 1,110,586 + PGA1_c10740 0.69 -0.5 1,110,766 + -0.4 1,110,812 - -0.3 1,110,831 - -1.0 1,110,841 - +0.8 1,110,885 - +0.1 1,110,940 + -0.8 1,110,948 - +0.1 1,110,965 + -0.3 1,111,039 - -2.4
Or see this region's nucleotide sequence