Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3079 and DvMF_3080 are separated by 67 nucleotides DvMF_3080 and DvMF_3081 are separated by 214 nucleotides DvMF_3081 and DvMF_3082 are separated by 228 nucleotides DvMF_3082 and DvMF_3083 are separated by 303 nucleotides
DvMF_3079: DvMF_3079 - hypothetical protein (RefSeq), at 3,887,864 to 3,889,366
_3079
DvMF_3080: DvMF_3080 - hypothetical protein (RefSeq), at 3,889,434 to 3,889,640
_3080
DvMF_3081: DvMF_3081 - hypothetical protein (RefSeq), at 3,889,855 to 3,890,037
_3081
DvMF_3082: DvMF_3082 - protein of unknown function UPF0118 (RefSeq), at 3,890,266 to 3,891,459
_3082
DvMF_3083: DvMF_3083 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 3,891,763 to 3,894,993
_3083
Position (kb)
3890
3891
3892 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3889.408 kb on + strand at 3889.457 kb on + strand, within DvMF_3080 at 3889.457 kb on + strand, within DvMF_3080 at 3889.465 kb on - strand, within DvMF_3080 at 3889.489 kb on + strand, within DvMF_3080 at 3889.562 kb on - strand, within DvMF_3080 at 3889.741 kb on - strand at 3889.810 kb on + strand at 3890.381 kb on - strand at 3890.393 kb on + strand, within DvMF_3082 at 3890.401 kb on - strand, within DvMF_3082 at 3890.401 kb on - strand, within DvMF_3082 at 3890.431 kb on + strand, within DvMF_3082 at 3890.493 kb on - strand, within DvMF_3082 at 3890.499 kb on - strand, within DvMF_3082 at 3890.519 kb on + strand, within DvMF_3082 at 3890.753 kb on - strand, within DvMF_3082 at 3890.769 kb on + strand, within DvMF_3082 at 3890.769 kb on + strand, within DvMF_3082 at 3891.039 kb on - strand, within DvMF_3082 at 3891.117 kb on + strand, within DvMF_3082 at 3891.672 kb on - strand at 3891.939 kb on + strand at 3892.053 kb on + strand at 3892.106 kb on + strand, within DvMF_3083 at 3892.111 kb on + strand, within DvMF_3083 at 3892.181 kb on - strand, within DvMF_3083
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 3,889,408 + -0.5 3,889,457 + DvMF_3080 0.11 -0.7 3,889,457 + DvMF_3080 0.11 +0.2 3,889,465 - DvMF_3080 0.15 -0.2 3,889,489 + DvMF_3080 0.27 -0.8 3,889,562 - DvMF_3080 0.62 -1.2 3,889,741 - -1.2 3,889,810 + +0.1 3,890,381 - -3.0 3,890,393 + DvMF_3082 0.11 +0.5 3,890,401 - DvMF_3082 0.11 -0.4 3,890,401 - DvMF_3082 0.11 +0.4 3,890,431 + DvMF_3082 0.14 -0.4 3,890,493 - DvMF_3082 0.19 +0.1 3,890,499 - DvMF_3082 0.20 -2.1 3,890,519 + DvMF_3082 0.21 -0.6 3,890,753 - DvMF_3082 0.41 -1.5 3,890,769 + DvMF_3082 0.42 +0.2 3,890,769 + DvMF_3082 0.42 -2.0 3,891,039 - DvMF_3082 0.65 -0.2 3,891,117 + DvMF_3082 0.71 -0.6 3,891,672 - -1.8 3,891,939 + -0.7 3,892,053 + -1.0 3,892,106 + DvMF_3083 0.11 -1.2 3,892,111 + DvMF_3083 0.11 -0.7 3,892,181 - DvMF_3083 0.13 -1.5
Or see this region's nucleotide sequence