Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2992

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2991 and DvMF_2992 are separated by 143 nucleotidesDvMF_2992 and DvMF_R0077 are separated by 405 nucleotidesDvMF_R0077 and DvMF_2993 are separated by 274 nucleotides DvMF_2991: DvMF_2991 - Radical SAM domain protein (RefSeq), at 3,771,865 to 3,773,058 _2991 DvMF_2992: DvMF_2992 - ATPase, P-type (transporting), HAD superfamily, subfamily IC (RefSeq), at 3,773,202 to 3,776,096 _2992 DvMF_R0077: DvMF_R0077 - tRNA-Asn (RefSeq), at 3,776,502 to 3,776,577 _R0077 DvMF_2993: DvMF_2993 - lysyl-tRNA synthetase (RefSeq), at 3,776,852 to 3,778,357 _2993 Position (kb) 3773 3774 3775 3776 3777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3772.208 kb on + strand, within DvMF_2991at 3772.333 kb on + strand, within DvMF_2991at 3772.359 kb on + strand, within DvMF_2991at 3772.663 kb on - strand, within DvMF_2991at 3772.942 kb on - strandat 3773.082 kb on + strandat 3773.258 kb on + strandat 3773.306 kb on + strandat 3773.333 kb on - strandat 3773.592 kb on + strand, within DvMF_2992at 3773.593 kb on - strand, within DvMF_2992at 3773.640 kb on - strand, within DvMF_2992at 3773.708 kb on + strand, within DvMF_2992at 3773.720 kb on + strand, within DvMF_2992at 3774.290 kb on + strand, within DvMF_2992at 3774.298 kb on - strand, within DvMF_2992at 3774.317 kb on - strand, within DvMF_2992at 3774.474 kb on - strand, within DvMF_2992at 3774.686 kb on + strand, within DvMF_2992at 3774.721 kb on + strand, within DvMF_2992at 3774.780 kb on - strand, within DvMF_2992at 3774.858 kb on - strand, within DvMF_2992at 3774.887 kb on - strand, within DvMF_2992at 3774.924 kb on - strand, within DvMF_2992at 3774.988 kb on + strand, within DvMF_2992at 3774.988 kb on + strand, within DvMF_2992at 3775.036 kb on + strand, within DvMF_2992at 3775.295 kb on - strand, within DvMF_2992at 3775.723 kb on - strand, within DvMF_2992at 3775.812 kb on - strandat 3775.958 kb on + strandat 3776.121 kb on - strandat 3776.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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3,772,208 + DvMF_2991 0.29 -1.3
3,772,333 + DvMF_2991 0.39 -0.6
3,772,359 + DvMF_2991 0.41 -2.2
3,772,663 - DvMF_2991 0.67 -3.2
3,772,942 - -0.4
3,773,082 + -1.3
3,773,258 + -0.9
3,773,306 + -1.5
3,773,333 - +1.0
3,773,592 + DvMF_2992 0.13 -3.7
3,773,593 - DvMF_2992 0.14 -1.2
3,773,640 - DvMF_2992 0.15 -0.0
3,773,708 + DvMF_2992 0.17 -0.8
3,773,720 + DvMF_2992 0.18 -1.1
3,774,290 + DvMF_2992 0.38 -0.5
3,774,298 - DvMF_2992 0.38 -0.6
3,774,317 - DvMF_2992 0.39 -1.7
3,774,474 - DvMF_2992 0.44 -2.9
3,774,686 + DvMF_2992 0.51 -1.0
3,774,721 + DvMF_2992 0.52 -2.2
3,774,780 - DvMF_2992 0.55 -1.1
3,774,858 - DvMF_2992 0.57 -2.7
3,774,887 - DvMF_2992 0.58 -0.2
3,774,924 - DvMF_2992 0.59 -4.4
3,774,988 + DvMF_2992 0.62 +1.0
3,774,988 + DvMF_2992 0.62 +1.3
3,775,036 + DvMF_2992 0.63 -0.7
3,775,295 - DvMF_2992 0.72 -0.6
3,775,723 - DvMF_2992 0.87 -1.5
3,775,812 - -0.3
3,775,958 + +0.1
3,776,121 - -0.4
3,776,298 + -0.9

Or see this region's nucleotide sequence