Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2668 and rnhA are separated by 90 nucleotides rnhA and DvMF_2670 are separated by 119 nucleotides DvMF_2670 and DvMF_2671 are separated by 12 nucleotides
DvMF_2668: DvMF_2668 - type IV pilus assembly PilZ (RefSeq), at 3,371,117 to 3,371,827
_2668
DvMF_2669: rnhA - ribonuclease H (RefSeq), at 3,371,918 to 3,372,388
rnhA
DvMF_2670: DvMF_2670 - hypothetical protein (RefSeq), at 3,372,508 to 3,373,029
_2670
DvMF_2671: DvMF_2671 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 3,373,042 to 3,374,847
_2671
Position (kb)
3372
3373
3374 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3371.967 kb on - strand, within rnhA at 3372.188 kb on - strand, within rnhA at 3372.188 kb on - strand, within rnhA at 3372.195 kb on - strand, within rnhA at 3372.212 kb on - strand, within rnhA at 3372.265 kb on + strand, within rnhA at 3372.265 kb on + strand, within rnhA at 3372.533 kb on - strand at 3372.545 kb on - strand at 3372.628 kb on + strand, within DvMF_2670 at 3372.710 kb on - strand, within DvMF_2670 at 3372.725 kb on - strand, within DvMF_2670 at 3372.759 kb on + strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.767 kb on - strand, within DvMF_2670 at 3372.785 kb on + strand, within DvMF_2670 at 3372.787 kb on + strand, within DvMF_2670 at 3372.793 kb on - strand, within DvMF_2670 at 3372.806 kb on + strand, within DvMF_2670 at 3372.812 kb on - strand, within DvMF_2670 at 3372.821 kb on + strand, within DvMF_2670 at 3373.207 kb on - strand at 3373.256 kb on + strand, within DvMF_2671 at 3373.265 kb on - strand, within DvMF_2671 at 3373.344 kb on + strand, within DvMF_2671 at 3373.363 kb on + strand, within DvMF_2671 at 3373.467 kb on + strand, within DvMF_2671 at 3373.489 kb on + strand, within DvMF_2671 at 3373.721 kb on + strand, within DvMF_2671 at 3373.768 kb on + strand, within DvMF_2671 at 3373.782 kb on - strand, within DvMF_2671 at 3373.803 kb on - strand, within DvMF_2671
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 3,371,967 - rnhA DvMF_2669 0.10 -0.5 3,372,188 - rnhA DvMF_2669 0.57 -0.9 3,372,188 - rnhA DvMF_2669 0.57 +0.6 3,372,195 - rnhA DvMF_2669 0.59 -0.2 3,372,212 - rnhA DvMF_2669 0.62 -0.6 3,372,265 + rnhA DvMF_2669 0.74 +0.9 3,372,265 + rnhA DvMF_2669 0.74 -0.1 3,372,533 - -1.2 3,372,545 - -1.1 3,372,628 + DvMF_2670 0.23 -1.0 3,372,710 - DvMF_2670 0.39 -0.9 3,372,725 - DvMF_2670 0.42 -0.6 3,372,759 + DvMF_2670 0.48 -0.4 3,372,767 - DvMF_2670 0.50 +0.4 3,372,767 - DvMF_2670 0.50 -1.1 3,372,767 - DvMF_2670 0.50 -0.0 3,372,767 - DvMF_2670 0.50 -0.3 3,372,767 - DvMF_2670 0.50 -3.6 3,372,785 + DvMF_2670 0.53 +2.1 3,372,787 + DvMF_2670 0.53 -0.6 3,372,793 - DvMF_2670 0.55 -0.5 3,372,806 + DvMF_2670 0.57 -4.6 3,372,812 - DvMF_2670 0.58 -0.4 3,372,821 + DvMF_2670 0.60 +0.3 3,373,207 - +0.1 3,373,256 + DvMF_2671 0.12 -0.7 3,373,265 - DvMF_2671 0.12 -0.6 3,373,344 + DvMF_2671 0.17 -0.0 3,373,363 + DvMF_2671 0.18 -1.4 3,373,467 + DvMF_2671 0.24 -1.1 3,373,489 + DvMF_2671 0.25 -0.1 3,373,721 + DvMF_2671 0.38 -0.3 3,373,768 + DvMF_2671 0.40 -1.3 3,373,782 - DvMF_2671 0.41 -0.2 3,373,803 - DvMF_2671 0.42 -0.4
Or see this region's nucleotide sequence