Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2642

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2640 and DvMF_2641 are separated by 247 nucleotidesDvMF_2641 and DvMF_2642 are separated by 175 nucleotidesDvMF_2642 and DvMF_2643 are separated by 515 nucleotides DvMF_2640: DvMF_2640 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,337,856 to 3,340,723 _2640 DvMF_2641: DvMF_2641 - twin-arginine translocation protein, TatA/E family subunit (RefSeq), at 3,340,971 to 3,341,144 _2641 DvMF_2642: DvMF_2642 - hypothetical protein (RefSeq), at 3,341,320 to 3,342,693 _2642 DvMF_2643: DvMF_2643 - response regulator receiver modulated CheW protein (RefSeq), at 3,343,209 to 3,344,381 _2643 Position (kb) 3341 3342 3343Strain fitness (log2 ratio) -3 -2 -1 0 1at 3340.349 kb on + strand, within DvMF_2640at 3340.349 kb on + strand, within DvMF_2640at 3340.429 kb on + strand, within DvMF_2640at 3340.759 kb on + strandat 3341.216 kb on + strandat 3341.414 kb on + strandat 3341.482 kb on + strand, within DvMF_2642at 3341.688 kb on + strand, within DvMF_2642at 3341.695 kb on - strand, within DvMF_2642at 3341.734 kb on + strand, within DvMF_2642at 3341.889 kb on - strand, within DvMF_2642at 3342.044 kb on - strand, within DvMF_2642at 3342.135 kb on + strand, within DvMF_2642at 3342.225 kb on - strand, within DvMF_2642at 3342.340 kb on - strand, within DvMF_2642at 3342.612 kb on + strandat 3343.053 kb on - strandat 3343.090 kb on + strandat 3343.217 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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3,340,349 + DvMF_2640 0.87 -0.7
3,340,349 + DvMF_2640 0.87 -0.9
3,340,429 + DvMF_2640 0.90 -0.7
3,340,759 + -0.6
3,341,216 + -3.7
3,341,414 + -0.6
3,341,482 + DvMF_2642 0.12 +0.0
3,341,688 + DvMF_2642 0.27 -1.1
3,341,695 - DvMF_2642 0.27 -0.6
3,341,734 + DvMF_2642 0.30 -1.1
3,341,889 - DvMF_2642 0.41 -0.5
3,342,044 - DvMF_2642 0.53 -0.8
3,342,135 + DvMF_2642 0.59 -1.0
3,342,225 - DvMF_2642 0.66 +0.3
3,342,340 - DvMF_2642 0.74 -0.1
3,342,612 + -0.1
3,343,053 - +0.5
3,343,090 + -0.8
3,343,217 + -1.4

Or see this region's nucleotide sequence