Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2634

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2633 and DvMF_2634 are separated by 680 nucleotidesDvMF_2634 and DvMF_2635 are separated by 270 nucleotidesDvMF_2635 and DvMF_2636 are separated by 206 nucleotides DvMF_2633: DvMF_2633 - Aldehyde Dehydrogenase (RefSeq), at 3,327,308 to 3,328,690 _2633 DvMF_2634: DvMF_2634 - FAD dependent oxidoreductase (RefSeq), at 3,329,371 to 3,330,762 _2634 DvMF_2635: DvMF_2635 - hypothetical protein (RefSeq), at 3,331,033 to 3,331,260 _2635 DvMF_2636: DvMF_2636 - hypothetical protein (RefSeq), at 3,331,467 to 3,332,336 _2636 Position (kb) 3329 3330 3331Strain fitness (log2 ratio) -3 -2 -1 0 1at 3328.468 kb on - strand, within DvMF_2633at 3328.470 kb on + strand, within DvMF_2633at 3328.632 kb on + strandat 3328.634 kb on + strandat 3328.686 kb on + strandat 3328.784 kb on + strandat 3328.905 kb on + strandat 3328.927 kb on - strandat 3329.022 kb on + strandat 3329.037 kb on + strandat 3329.089 kb on + strandat 3329.095 kb on + strandat 3329.287 kb on - strandat 3329.389 kb on - strandat 3329.638 kb on - strand, within DvMF_2634at 3329.654 kb on - strand, within DvMF_2634at 3329.748 kb on + strand, within DvMF_2634at 3329.902 kb on - strand, within DvMF_2634at 3330.059 kb on + strand, within DvMF_2634at 3330.059 kb on + strand, within DvMF_2634at 3330.059 kb on + strand, within DvMF_2634at 3330.059 kb on + strand, within DvMF_2634at 3330.059 kb on + strand, within DvMF_2634at 3330.059 kb on + strand, within DvMF_2634at 3330.067 kb on - strand, within DvMF_2634at 3330.090 kb on - strand, within DvMF_2634at 3330.176 kb on - strand, within DvMF_2634at 3330.291 kb on + strand, within DvMF_2634at 3330.449 kb on - strand, within DvMF_2634at 3330.452 kb on + strand, within DvMF_2634at 3330.471 kb on - strand, within DvMF_2634at 3330.811 kb on + strandat 3330.956 kb on + strandat 3331.032 kb on - strandat 3331.070 kb on - strand, within DvMF_2635at 3331.351 kb on - strandat 3331.759 kb on - strand, within DvMF_2636

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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3,328,468 - DvMF_2633 0.84 -1.7
3,328,470 + DvMF_2633 0.84 -1.0
3,328,632 + -1.6
3,328,634 + -1.0
3,328,686 + -0.1
3,328,784 + +0.4
3,328,905 + -2.4
3,328,927 - -1.0
3,329,022 + +0.5
3,329,037 + -0.8
3,329,089 + -1.0
3,329,095 + -2.4
3,329,287 - -1.8
3,329,389 - -3.1
3,329,638 - DvMF_2634 0.19 -0.5
3,329,654 - DvMF_2634 0.20 -3.1
3,329,748 + DvMF_2634 0.27 -0.9
3,329,902 - DvMF_2634 0.38 +0.6
3,330,059 + DvMF_2634 0.49 -2.1
3,330,059 + DvMF_2634 0.49 -1.0
3,330,059 + DvMF_2634 0.49 -2.2
3,330,059 + DvMF_2634 0.49 -0.7
3,330,059 + DvMF_2634 0.49 +0.4
3,330,059 + DvMF_2634 0.49 -1.1
3,330,067 - DvMF_2634 0.50 -3.7
3,330,090 - DvMF_2634 0.52 -1.1
3,330,176 - DvMF_2634 0.58 +0.1
3,330,291 + DvMF_2634 0.66 -1.4
3,330,449 - DvMF_2634 0.77 -0.7
3,330,452 + DvMF_2634 0.78 -0.0
3,330,471 - DvMF_2634 0.79 -1.7
3,330,811 + -0.6
3,330,956 + -0.7
3,331,032 - +0.3
3,331,070 - DvMF_2635 0.16 -1.4
3,331,351 - -2.9
3,331,759 - DvMF_2636 0.34 -0.6

Or see this region's nucleotide sequence