Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2628

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2627 and DvMF_2628 are separated by 239 nucleotidesDvMF_2628 and DvMF_2629 are separated by 237 nucleotidesDvMF_2629 and DvMF_2630 are separated by 196 nucleotides DvMF_2627: DvMF_2627 - transcriptional regulator, TetR family (RefSeq), at 3,318,289 to 3,318,849 _2627 DvMF_2628: DvMF_2628 - hypothetical protein (RefSeq), at 3,319,089 to 3,320,864 _2628 DvMF_2629: DvMF_2629 - Cupin 2 conserved barrel domain protein (RefSeq), at 3,321,102 to 3,321,518 _2629 DvMF_2630: DvMF_2630 - penicillin-binding protein, 1A family (RefSeq), at 3,321,715 to 3,324,138 _2630 Position (kb) 3319 3320 3321Strain fitness (log2 ratio) -2 -1 0 1 2at 3318.138 kb on + strandat 3318.150 kb on + strandat 3318.654 kb on + strand, within DvMF_2627at 3318.662 kb on - strand, within DvMF_2627at 3318.760 kb on + strand, within DvMF_2627at 3318.821 kb on + strandat 3319.136 kb on - strandat 3319.390 kb on - strand, within DvMF_2628at 3319.658 kb on + strand, within DvMF_2628at 3319.991 kb on + strand, within DvMF_2628at 3319.991 kb on + strand, within DvMF_2628at 3319.991 kb on + strand, within DvMF_2628at 3319.991 kb on + strand, within DvMF_2628at 3319.999 kb on + strand, within DvMF_2628at 3320.285 kb on - strand, within DvMF_2628at 3320.412 kb on - strand, within DvMF_2628at 3320.644 kb on + strand, within DvMF_2628at 3320.729 kb on - strandat 3320.884 kb on + strandat 3321.008 kb on - strandat 3321.008 kb on - strandat 3321.018 kb on - strandat 3321.101 kb on - strandat 3321.147 kb on + strand, within DvMF_2629at 3321.192 kb on - strand, within DvMF_2629at 3321.256 kb on - strand, within DvMF_2629at 3321.300 kb on + strand, within DvMF_2629at 3321.343 kb on - strand, within DvMF_2629at 3321.402 kb on + strand, within DvMF_2629at 3321.548 kb on + strandat 3321.713 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
remove
3,318,138 + -1.4
3,318,150 + -0.7
3,318,654 + DvMF_2627 0.65 -0.3
3,318,662 - DvMF_2627 0.66 +0.0
3,318,760 + DvMF_2627 0.84 -0.4
3,318,821 + -2.2
3,319,136 - -2.2
3,319,390 - DvMF_2628 0.17 +0.5
3,319,658 + DvMF_2628 0.32 -1.9
3,319,991 + DvMF_2628 0.51 -0.7
3,319,991 + DvMF_2628 0.51 -1.3
3,319,991 + DvMF_2628 0.51 -2.0
3,319,991 + DvMF_2628 0.51 -0.4
3,319,999 + DvMF_2628 0.51 -0.7
3,320,285 - DvMF_2628 0.67 -1.1
3,320,412 - DvMF_2628 0.74 -1.2
3,320,644 + DvMF_2628 0.88 -0.9
3,320,729 - -1.2
3,320,884 + -2.2
3,321,008 - -1.9
3,321,008 - -0.3
3,321,018 - -0.8
3,321,101 - -0.3
3,321,147 + DvMF_2629 0.11 -1.1
3,321,192 - DvMF_2629 0.22 +0.4
3,321,256 - DvMF_2629 0.37 -1.0
3,321,300 + DvMF_2629 0.47 -0.7
3,321,343 - DvMF_2629 0.58 +2.3
3,321,402 + DvMF_2629 0.72 -1.6
3,321,548 + -0.4
3,321,713 + -1.3

Or see this region's nucleotide sequence