Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2599

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2598 and DvMF_2599 are separated by 765 nucleotidesDvMF_2599 and DvMF_2600 are separated by 123 nucleotides DvMF_2598: DvMF_2598 - cytochrome c class III (RefSeq), at 3,281,542 to 3,283,212 _2598 DvMF_2599: DvMF_2599 - Xylose isomerase domain protein TIM barrel (RefSeq), at 3,283,978 to 3,284,826 _2599 DvMF_2600: DvMF_2600 - beta-lactamase domain protein (RefSeq), at 3,284,950 to 3,285,975 _2600 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -2 -1 0 1at 3283.930 kb on - strandat 3283.930 kb on - strandat 3284.130 kb on + strand, within DvMF_2599at 3284.151 kb on + strand, within DvMF_2599at 3284.151 kb on + strand, within DvMF_2599at 3284.159 kb on - strand, within DvMF_2599at 3284.548 kb on + strand, within DvMF_2599at 3284.555 kb on + strand, within DvMF_2599at 3284.555 kb on + strand, within DvMF_2599at 3284.622 kb on - strand, within DvMF_2599at 3284.686 kb on - strand, within DvMF_2599at 3284.704 kb on - strand, within DvMF_2599at 3284.885 kb on - strandat 3285.057 kb on + strand, within DvMF_2600at 3285.144 kb on + strand, within DvMF_2600at 3285.266 kb on - strand, within DvMF_2600at 3285.448 kb on - strand, within DvMF_2600at 3285.482 kb on + strand, within DvMF_2600at 3285.625 kb on + strand, within DvMF_2600at 3285.628 kb on - strand, within DvMF_2600at 3285.750 kb on + strand, within DvMF_2600at 3285.759 kb on + strand, within DvMF_2600

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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3,283,930 - -0.3
3,283,930 - +0.3
3,284,130 + DvMF_2599 0.18 -0.3
3,284,151 + DvMF_2599 0.20 +0.2
3,284,151 + DvMF_2599 0.20 +0.2
3,284,159 - DvMF_2599 0.21 +0.5
3,284,548 + DvMF_2599 0.67 -1.7
3,284,555 + DvMF_2599 0.68 +0.1
3,284,555 + DvMF_2599 0.68 +0.9
3,284,622 - DvMF_2599 0.76 -0.6
3,284,686 - DvMF_2599 0.83 -0.2
3,284,704 - DvMF_2599 0.86 +0.4
3,284,885 - -0.5
3,285,057 + DvMF_2600 0.10 -1.0
3,285,144 + DvMF_2600 0.19 -0.0
3,285,266 - DvMF_2600 0.31 -0.6
3,285,448 - DvMF_2600 0.49 +0.2
3,285,482 + DvMF_2600 0.52 +0.5
3,285,625 + DvMF_2600 0.66 -0.7
3,285,628 - DvMF_2600 0.66 +0.3
3,285,750 + DvMF_2600 0.78 -2.0
3,285,759 + DvMF_2600 0.79 -1.7

Or see this region's nucleotide sequence