Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2482

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2480 and DvMF_2481 are separated by 123 nucleotidesDvMF_2481 and DvMF_2482 are separated by 395 nucleotidesDvMF_2482 and DvMF_2483 are separated by 371 nucleotides DvMF_2480: DvMF_2480 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 3,127,311 to 3,127,469 _2480 DvMF_2481: DvMF_2481 - desulfoferrodoxin (RefSeq), at 3,127,593 to 3,127,967 _2481 DvMF_2482: DvMF_2482 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,128,363 to 3,130,384 _2482 DvMF_2483: DvMF_2483 - multi-sensor hybrid histidine kinase (RefSeq), at 3,130,756 to 3,133,971 _2483 Position (kb) 3128 3129 3130 3131Strain fitness (log2 ratio) -3 -2 -1 0 1at 3127.792 kb on - strand, within DvMF_2481at 3127.941 kb on + strandat 3127.941 kb on + strandat 3128.110 kb on + strandat 3128.147 kb on - strandat 3128.352 kb on - strandat 3128.354 kb on + strandat 3128.362 kb on - strandat 3128.628 kb on + strand, within DvMF_2482at 3129.327 kb on + strand, within DvMF_2482at 3129.411 kb on - strand, within DvMF_2482at 3129.437 kb on + strand, within DvMF_2482at 3129.508 kb on - strand, within DvMF_2482at 3129.965 kb on - strand, within DvMF_2482at 3130.028 kb on - strand, within DvMF_2482at 3130.028 kb on - strand, within DvMF_2482at 3130.188 kb on + strandat 3130.226 kb on - strandat 3130.422 kb on + strandat 3130.525 kb on + strandat 3130.758 kb on + strandat 3130.766 kb on - strandat 3130.770 kb on + strandat 3130.918 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
remove
3,127,792 - DvMF_2481 0.53 -0.5
3,127,941 + -0.8
3,127,941 + -3.4
3,128,110 + -0.3
3,128,147 - -0.8
3,128,352 - +0.4
3,128,354 + -0.6
3,128,362 - -0.3
3,128,628 + DvMF_2482 0.13 +0.1
3,129,327 + DvMF_2482 0.48 -0.7
3,129,411 - DvMF_2482 0.52 -1.0
3,129,437 + DvMF_2482 0.53 +0.1
3,129,508 - DvMF_2482 0.57 -0.8
3,129,965 - DvMF_2482 0.79 -0.8
3,130,028 - DvMF_2482 0.82 -0.3
3,130,028 - DvMF_2482 0.82 +0.2
3,130,188 + -2.6
3,130,226 - -1.5
3,130,422 + -3.1
3,130,525 + -1.0
3,130,758 + -1.4
3,130,766 - +0.2
3,130,770 + -1.6
3,130,918 + -2.6

Or see this region's nucleotide sequence