Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2467 and DvMF_2468 are separated by 58 nucleotides DvMF_2468 and DvMF_2469 overlap by 4 nucleotides DvMF_2469 and DvMF_2470 are separated by 11 nucleotides
DvMF_2467: DvMF_2467 - hypothetical protein (RefSeq), at 3,112,109 to 3,112,639
_2467
DvMF_2468: DvMF_2468 - molybdopterin-containing oxidoreductase membrane anchor subunit (RefSeq), at 3,112,698 to 3,113,495
_2468
DvMF_2469: DvMF_2469 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 3,113,492 to 3,114,058
_2469
DvMF_2470: DvMF_2470 - molybdopterin oxidoreductase (RefSeq), at 3,114,070 to 3,116,325
_2470
Position (kb)
3113
3114
3115 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3112.696 kb on + strand at 3113.082 kb on + strand, within DvMF_2468 at 3113.090 kb on - strand, within DvMF_2468 at 3113.350 kb on - strand, within DvMF_2468 at 3113.421 kb on + strand at 3113.475 kb on + strand at 3113.730 kb on + strand, within DvMF_2469 at 3113.829 kb on + strand, within DvMF_2469 at 3113.859 kb on - strand, within DvMF_2469 at 3113.912 kb on - strand, within DvMF_2469 at 3114.271 kb on - strand at 3114.342 kb on - strand, within DvMF_2470 at 3114.748 kb on + strand, within DvMF_2470 at 3114.878 kb on - strand, within DvMF_2470 at 3114.968 kb on + strand, within DvMF_2470 at 3115.013 kb on + strand, within DvMF_2470
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 3,112,696 + -0.6 3,113,082 + DvMF_2468 0.48 -0.9 3,113,090 - DvMF_2468 0.49 -0.9 3,113,350 - DvMF_2468 0.82 +0.1 3,113,421 + -0.8 3,113,475 + +1.5 3,113,730 + DvMF_2469 0.42 -0.7 3,113,829 + DvMF_2469 0.59 +0.9 3,113,859 - DvMF_2469 0.65 -0.5 3,113,912 - DvMF_2469 0.74 -0.7 3,114,271 - -0.3 3,114,342 - DvMF_2470 0.12 -0.7 3,114,748 + DvMF_2470 0.30 -3.4 3,114,878 - DvMF_2470 0.36 -1.2 3,114,968 + DvMF_2470 0.40 -1.1 3,115,013 + DvMF_2470 0.42 -0.0
Or see this region's nucleotide sequence