Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2389

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2388 and DvMF_2389 are separated by 362 nucleotidesDvMF_2389 and DvMF_2390 are separated by 117 nucleotides DvMF_2388: DvMF_2388 - ferredoxin-dependent glutamate synthase (RefSeq), at 3,017,954 to 3,019,588 _2388 DvMF_2389: DvMF_2389 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,019,951 to 3,022,284 _2389 DvMF_2390: DvMF_2390 - arsenite-activated ATPase ArsA (RefSeq), at 3,022,402 to 3,024,141 _2390 Position (kb) 3019 3020 3021 3022 3023Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3019.218 kb on - strand, within DvMF_2388at 3019.233 kb on - strand, within DvMF_2388at 3019.311 kb on - strand, within DvMF_2388at 3019.495 kb on - strandat 3019.497 kb on + strandat 3020.083 kb on + strandat 3020.093 kb on - strandat 3020.158 kb on - strandat 3020.227 kb on + strand, within DvMF_2389at 3020.257 kb on + strand, within DvMF_2389at 3020.296 kb on + strand, within DvMF_2389at 3020.296 kb on + strand, within DvMF_2389at 3020.304 kb on - strand, within DvMF_2389at 3020.448 kb on - strand, within DvMF_2389at 3020.568 kb on + strand, within DvMF_2389at 3020.827 kb on - strand, within DvMF_2389at 3021.039 kb on + strand, within DvMF_2389at 3021.380 kb on + strand, within DvMF_2389at 3021.408 kb on - strand, within DvMF_2389at 3021.605 kb on + strand, within DvMF_2389at 3021.727 kb on + strand, within DvMF_2389at 3021.730 kb on - strand, within DvMF_2389at 3021.868 kb on - strand, within DvMF_2389at 3022.527 kb on + strandat 3022.527 kb on + strandat 3022.527 kb on + strandat 3022.535 kb on - strandat 3022.535 kb on - strandat 3022.600 kb on + strand, within DvMF_2390at 3022.856 kb on + strand, within DvMF_2390at 3022.958 kb on + strand, within DvMF_2390at 3023.145 kb on - strand, within DvMF_2390at 3023.149 kb on + strand, within DvMF_2390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
remove
3,019,218 - DvMF_2388 0.77 -2.6
3,019,233 - DvMF_2388 0.78 +0.6
3,019,311 - DvMF_2388 0.83 -0.8
3,019,495 - -0.4
3,019,497 + -0.3
3,020,083 + -0.8
3,020,093 - -0.7
3,020,158 - -1.2
3,020,227 + DvMF_2389 0.12 +1.6
3,020,257 + DvMF_2389 0.13 -1.2
3,020,296 + DvMF_2389 0.15 -0.1
3,020,296 + DvMF_2389 0.15 -3.0
3,020,304 - DvMF_2389 0.15 +0.3
3,020,448 - DvMF_2389 0.21 -3.3
3,020,568 + DvMF_2389 0.26 +0.2
3,020,827 - DvMF_2389 0.38 +0.1
3,021,039 + DvMF_2389 0.47 -0.2
3,021,380 + DvMF_2389 0.61 -0.3
3,021,408 - DvMF_2389 0.62 -0.8
3,021,605 + DvMF_2389 0.71 -1.1
3,021,727 + DvMF_2389 0.76 -0.8
3,021,730 - DvMF_2389 0.76 +0.8
3,021,868 - DvMF_2389 0.82 -0.1
3,022,527 + -1.2
3,022,527 + -4.3
3,022,527 + -4.4
3,022,535 - -2.1
3,022,535 - +1.2
3,022,600 + DvMF_2390 0.11 +0.9
3,022,856 + DvMF_2390 0.26 -0.4
3,022,958 + DvMF_2390 0.32 +0.3
3,023,145 - DvMF_2390 0.43 +0.7
3,023,149 + DvMF_2390 0.43 -0.4

Or see this region's nucleotide sequence