Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2000

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1999 and DvMF_2000 are separated by 465 nucleotidesDvMF_2000 and DvMF_2001 overlap by 8 nucleotides DvMF_1999: DvMF_1999 - protein of unknown function DUF112 transmembrane (RefSeq), at 2,477,896 to 2,479,440 _1999 DvMF_2000: DvMF_2000 - hypothetical protein (RefSeq), at 2,479,906 to 2,480,367 _2000 DvMF_2001: DvMF_2001 - protein of unknown function DUF112 transmembrane (RefSeq), at 2,480,360 to 2,481,904 _2001 Position (kb) 2479 2480 2481Strain fitness (log2 ratio) -3 -2 -1 0 1at 2479.458 kb on - strandat 2479.478 kb on - strandat 2479.581 kb on + strandat 2479.647 kb on + strandat 2479.918 kb on + strandat 2479.975 kb on + strand, within DvMF_2000at 2480.021 kb on + strand, within DvMF_2000at 2480.043 kb on - strand, within DvMF_2000at 2480.131 kb on + strand, within DvMF_2000at 2480.139 kb on - strand, within DvMF_2000at 2480.341 kb on + strandat 2480.379 kb on + strandat 2480.379 kb on + strandat 2480.482 kb on - strandat 2480.738 kb on + strand, within DvMF_2001at 2480.738 kb on + strand, within DvMF_2001at 2480.874 kb on - strand, within DvMF_2001at 2480.874 kb on - strand, within DvMF_2001at 2481.220 kb on - strand, within DvMF_2001at 2481.256 kb on + strand, within DvMF_2001

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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2,479,458 - +1.5
2,479,478 - -0.1
2,479,581 + -1.2
2,479,647 + -0.8
2,479,918 + -3.5
2,479,975 + DvMF_2000 0.15 -0.9
2,480,021 + DvMF_2000 0.25 +0.4
2,480,043 - DvMF_2000 0.30 -2.0
2,480,131 + DvMF_2000 0.49 -3.7
2,480,139 - DvMF_2000 0.50 -0.7
2,480,341 + -0.3
2,480,379 + -1.5
2,480,379 + -0.1
2,480,482 - -0.4
2,480,738 + DvMF_2001 0.24 -0.8
2,480,738 + DvMF_2001 0.24 -0.9
2,480,874 - DvMF_2001 0.33 -0.3
2,480,874 - DvMF_2001 0.33 -0.9
2,481,220 - DvMF_2001 0.56 -1.7
2,481,256 + DvMF_2001 0.58 -1.7

Or see this region's nucleotide sequence