Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1929

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1928 and DvMF_1929 are separated by 37 nucleotidesDvMF_1929 and DvMF_1930 are separated by 120 nucleotidesDvMF_1930 and DvMF_1931 are separated by 11 nucleotides DvMF_1928: DvMF_1928 - FAD dependent oxidoreductase (RefSeq), at 2,378,075 to 2,379,457 _1928 DvMF_1929: DvMF_1929 - peptidase M24 (RefSeq), at 2,379,495 to 2,380,565 _1929 DvMF_1930: DvMF_1930 - protein of unknown function DUF336 (RefSeq), at 2,380,686 to 2,381,120 _1930 DvMF_1931: DvMF_1931 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,381,132 to 2,383,054 _1931 Position (kb) 2379 2380 2381Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2378.537 kb on + strand, within DvMF_1928at 2378.620 kb on - strand, within DvMF_1928at 2379.300 kb on + strand, within DvMF_1928at 2379.335 kb on - strandat 2379.352 kb on - strandat 2379.422 kb on - strandat 2379.680 kb on + strand, within DvMF_1929at 2379.688 kb on - strand, within DvMF_1929at 2379.701 kb on + strand, within DvMF_1929at 2379.778 kb on - strand, within DvMF_1929at 2379.859 kb on - strand, within DvMF_1929at 2379.859 kb on - strand, within DvMF_1929at 2379.908 kb on + strand, within DvMF_1929at 2380.075 kb on - strand, within DvMF_1929at 2380.156 kb on - strand, within DvMF_1929at 2380.187 kb on + strand, within DvMF_1929at 2380.210 kb on + strand, within DvMF_1929at 2380.210 kb on + strand, within DvMF_1929at 2380.252 kb on + strand, within DvMF_1929at 2380.260 kb on - strand, within DvMF_1929at 2380.490 kb on + strandat 2380.661 kb on + strandat 2380.871 kb on + strand, within DvMF_1930at 2380.906 kb on - strand, within DvMF_1930at 2381.069 kb on - strand, within DvMF_1930at 2381.130 kb on + strandat 2381.162 kb on - strandat 2381.190 kb on - strandat 2381.266 kb on + strandat 2381.266 kb on + strandat 2381.539 kb on + strand, within DvMF_1931

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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2,378,537 + DvMF_1928 0.33 -0.1
2,378,620 - DvMF_1928 0.39 -1.9
2,379,300 + DvMF_1928 0.89 -0.7
2,379,335 - -1.0
2,379,352 - -0.2
2,379,422 - -1.0
2,379,680 + DvMF_1929 0.17 +1.6
2,379,688 - DvMF_1929 0.18 -3.5
2,379,701 + DvMF_1929 0.19 +0.2
2,379,778 - DvMF_1929 0.26 -1.3
2,379,859 - DvMF_1929 0.34 -1.0
2,379,859 - DvMF_1929 0.34 -0.2
2,379,908 + DvMF_1929 0.39 -0.2
2,380,075 - DvMF_1929 0.54 -1.2
2,380,156 - DvMF_1929 0.62 -1.4
2,380,187 + DvMF_1929 0.65 -1.2
2,380,210 + DvMF_1929 0.67 -0.1
2,380,210 + DvMF_1929 0.67 -0.1
2,380,252 + DvMF_1929 0.71 -0.7
2,380,260 - DvMF_1929 0.71 -3.0
2,380,490 + -1.1
2,380,661 + -0.7
2,380,871 + DvMF_1930 0.43 -2.1
2,380,906 - DvMF_1930 0.51 -4.0
2,381,069 - DvMF_1930 0.88 -4.6
2,381,130 + -0.7
2,381,162 - +0.1
2,381,190 - -0.3
2,381,266 + -1.3
2,381,266 + -0.8
2,381,539 + DvMF_1931 0.21 -1.6

Or see this region's nucleotide sequence