Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1813 and DvMF_1814 are separated by 101 nucleotides DvMF_1814 and DvMF_1815 are separated by 403 nucleotides DvMF_1815 and DvMF_1816 are separated by 215 nucleotides DvMF_1816 and DvMF_1817 are separated by 407 nucleotides
DvMF_1813: DvMF_1813 - hypothetical protein (RefSeq), at 2,215,176 to 2,215,808
_1813
DvMF_1814: DvMF_1814 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,215,910 to 2,216,104
_1814
DvMF_1815: DvMF_1815 - hypothetical protein (RefSeq), at 2,216,508 to 2,216,786
_1815
DvMF_1816: DvMF_1816 - TPR repeat-containing protein (RefSeq), at 2,217,002 to 2,217,328
_1816
DvMF_1817: DvMF_1817 - chemotaxis protein CheX, putative (RefSeq), at 2,217,736 to 2,218,200
_1817
Position (kb)
2216
2217 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2215.628 kb on - strand, within DvMF_1813 at 2215.630 kb on + strand, within DvMF_1813 at 2215.832 kb on - strand at 2215.902 kb on - strand at 2216.090 kb on - strand at 2216.156 kb on - strand at 2216.184 kb on - strand at 2216.309 kb on - strand at 2216.507 kb on + strand at 2216.547 kb on - strand, within DvMF_1815 at 2216.714 kb on + strand, within DvMF_1815 at 2216.722 kb on - strand, within DvMF_1815 at 2216.740 kb on + strand, within DvMF_1815 at 2216.749 kb on + strand, within DvMF_1815 at 2216.766 kb on + strand at 2217.000 kb on - strand at 2217.073 kb on - strand, within DvMF_1816 at 2217.298 kb on + strand at 2217.354 kb on + strand at 2217.357 kb on - strand at 2217.432 kb on + strand at 2217.548 kb on - strand at 2217.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 2,215,628 - DvMF_1813 0.71 -1.2 2,215,630 + DvMF_1813 0.72 -0.6 2,215,832 - -0.8 2,215,902 - -1.0 2,216,090 - -1.8 2,216,156 - -3.5 2,216,184 - -1.0 2,216,309 - -0.7 2,216,507 + -0.2 2,216,547 - DvMF_1815 0.14 +0.5 2,216,714 + DvMF_1815 0.74 -0.5 2,216,722 - DvMF_1815 0.77 +0.0 2,216,740 + DvMF_1815 0.83 -1.0 2,216,749 + DvMF_1815 0.86 -1.0 2,216,766 + -1.1 2,217,000 - -0.5 2,217,073 - DvMF_1816 0.22 -4.7 2,217,298 + -0.6 2,217,354 + -1.9 2,217,357 - -1.3 2,217,432 + -1.1 2,217,548 - -0.5 2,217,581 - -0.0
Or see this region's nucleotide sequence