Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1597 and DvMF_1598 are separated by 203 nucleotides DvMF_1598 and DvMF_1599 are separated by 1 nucleotides DvMF_1599 and DvMF_1600 overlap by 4 nucleotides DvMF_1600 and DvMF_1601 overlap by 1 nucleotides
DvMF_1597: DvMF_1597 - NADH dehydrogenase (quinone) (RefSeq), at 1,968,770 to 1,969,744
_1597
DvMF_1598: DvMF_1598 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,969,948 to 1,970,571
_1598
DvMF_1599: DvMF_1599 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (RefSeq), at 1,970,573 to 1,971,079
_1599
DvMF_1600: DvMF_1600 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 1,971,076 to 1,971,390
_1600
DvMF_1601: DvMF_1601 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,971,390 to 1,972,889
_1601
Position (kb)
1969
1970
1971 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1969.124 kb on - strand, within DvMF_1597 at 1969.174 kb on - strand, within DvMF_1597 at 1969.261 kb on + strand, within DvMF_1597 at 1969.344 kb on - strand, within DvMF_1597 at 1969.416 kb on - strand, within DvMF_1597 at 1969.661 kb on - strand at 1969.749 kb on + strand at 1969.941 kb on + strand at 1970.141 kb on - strand, within DvMF_1598 at 1970.360 kb on - strand, within DvMF_1598 at 1970.541 kb on - strand at 1970.588 kb on + strand at 1970.892 kb on - strand, within DvMF_1599 at 1971.037 kb on + strand at 1971.042 kb on + strand at 1971.344 kb on + strand, within DvMF_1600 at 1971.548 kb on - strand, within DvMF_1601
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 1,969,124 - DvMF_1597 0.36 -2.3 1,969,174 - DvMF_1597 0.41 -0.2 1,969,261 + DvMF_1597 0.50 -2.1 1,969,344 - DvMF_1597 0.59 -1.1 1,969,416 - DvMF_1597 0.66 -0.4 1,969,661 - -0.3 1,969,749 + -0.8 1,969,941 + -1.5 1,970,141 - DvMF_1598 0.31 -2.3 1,970,360 - DvMF_1598 0.66 -3.7 1,970,541 - -1.3 1,970,588 + -0.3 1,970,892 - DvMF_1599 0.63 -3.8 1,971,037 + -0.7 1,971,042 + +1.0 1,971,344 + DvMF_1600 0.85 -0.0 1,971,548 - DvMF_1601 0.11 -1.1
Or see this region's nucleotide sequence