Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1487 and DvMF_R0043 are separated by 636 nucleotides DvMF_R0043 and DvMF_R0044 are separated by 6 nucleotides DvMF_R0044 and DvMF_1488 are separated by 173 nucleotides DvMF_1488 and DvMF_1489 are separated by 131 nucleotides
DvMF_1487: DvMF_1487 - GCN5-related N-acetyltransferase (RefSeq), at 1,823,858 to 1,824,394
_1487
DvMF_R0043: DvMF_R0043 - tRNA-Gln (RefSeq), at 1,825,031 to 1,825,105
_R0043
DvMF_R0044: DvMF_R0044 - tRNA-Glu (RefSeq), at 1,825,112 to 1,825,188
_R0044
DvMF_1488: DvMF_1488 - protein of unknown function DUF1063 (RefSeq), at 1,825,362 to 1,826,702
_1488
DvMF_1489: DvMF_1489 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,826,834 to 1,827,526
_1489
Position (kb)
1825
1826
1827 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1824.381 kb on + strand at 1824.599 kb on - strand at 1824.778 kb on - strand at 1824.892 kb on - strand at 1825.705 kb on + strand, within DvMF_1488 at 1825.723 kb on + strand, within DvMF_1488 at 1825.896 kb on + strand, within DvMF_1488 at 1826.181 kb on - strand, within DvMF_1488 at 1826.187 kb on + strand, within DvMF_1488 at 1826.195 kb on - strand, within DvMF_1488 at 1826.285 kb on - strand, within DvMF_1488 at 1827.313 kb on - strand, within DvMF_1489 at 1827.417 kb on + strand, within DvMF_1489
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 1,824,381 + -0.9 1,824,599 - -1.0 1,824,778 - -0.4 1,824,892 - -3.0 1,825,705 + DvMF_1488 0.26 -0.7 1,825,723 + DvMF_1488 0.27 -0.7 1,825,896 + DvMF_1488 0.40 +0.0 1,826,181 - DvMF_1488 0.61 -0.4 1,826,187 + DvMF_1488 0.62 +0.8 1,826,195 - DvMF_1488 0.62 -0.4 1,826,285 - DvMF_1488 0.69 -0.6 1,827,313 - DvMF_1489 0.69 -0.6 1,827,417 + DvMF_1489 0.84 -0.9
Or see this region's nucleotide sequence