Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1488

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1487 and DvMF_R0043 are separated by 636 nucleotidesDvMF_R0043 and DvMF_R0044 are separated by 6 nucleotidesDvMF_R0044 and DvMF_1488 are separated by 173 nucleotidesDvMF_1488 and DvMF_1489 are separated by 131 nucleotides DvMF_1487: DvMF_1487 - GCN5-related N-acetyltransferase (RefSeq), at 1,823,858 to 1,824,394 _1487 DvMF_R0043: DvMF_R0043 - tRNA-Gln (RefSeq), at 1,825,031 to 1,825,105 _R0043 DvMF_R0044: DvMF_R0044 - tRNA-Glu (RefSeq), at 1,825,112 to 1,825,188 _R0044 DvMF_1488: DvMF_1488 - protein of unknown function DUF1063 (RefSeq), at 1,825,362 to 1,826,702 _1488 DvMF_1489: DvMF_1489 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,826,834 to 1,827,526 _1489 Position (kb) 1825 1826 1827Strain fitness (log2 ratio) -3 -2 -1 0 1at 1824.381 kb on + strandat 1824.599 kb on - strandat 1824.778 kb on - strandat 1824.892 kb on - strandat 1825.705 kb on + strand, within DvMF_1488at 1825.723 kb on + strand, within DvMF_1488at 1825.896 kb on + strand, within DvMF_1488at 1826.181 kb on - strand, within DvMF_1488at 1826.187 kb on + strand, within DvMF_1488at 1826.195 kb on - strand, within DvMF_1488at 1826.285 kb on - strand, within DvMF_1488at 1827.313 kb on - strand, within DvMF_1489at 1827.417 kb on + strand, within DvMF_1489

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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1,824,381 + -0.9
1,824,599 - -1.0
1,824,778 - -0.4
1,824,892 - -3.0
1,825,705 + DvMF_1488 0.26 -0.7
1,825,723 + DvMF_1488 0.27 -0.7
1,825,896 + DvMF_1488 0.40 +0.0
1,826,181 - DvMF_1488 0.61 -0.4
1,826,187 + DvMF_1488 0.62 +0.8
1,826,195 - DvMF_1488 0.62 -0.4
1,826,285 - DvMF_1488 0.69 -0.6
1,827,313 - DvMF_1489 0.69 -0.6
1,827,417 + DvMF_1489 0.84 -0.9

Or see this region's nucleotide sequence