Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1460

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1459 and DvMF_1460 are separated by 62 nucleotidesDvMF_1460 and DvMF_1461 are separated by 32 nucleotides DvMF_1459: DvMF_1459 - domain of unknown function DUF1731 (RefSeq), at 1,788,198 to 1,789,154 _1459 DvMF_1460: DvMF_1460 - putative PAS/PAC sensor protein (RefSeq), at 1,789,217 to 1,790,641 _1460 DvMF_1461: DvMF_1461 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,790,674 to 1,792,149 _1461 Position (kb) 1789 1790 1791Strain fitness (log2 ratio) -2 -1 0 1at 1788.260 kb on + strandat 1788.696 kb on + strand, within DvMF_1459at 1788.709 kb on - strand, within DvMF_1459at 1788.709 kb on - strand, within DvMF_1459at 1789.006 kb on + strand, within DvMF_1459at 1789.203 kb on + strandat 1789.310 kb on + strandat 1789.464 kb on - strand, within DvMF_1460at 1789.525 kb on + strand, within DvMF_1460at 1789.626 kb on + strand, within DvMF_1460at 1789.693 kb on - strand, within DvMF_1460at 1789.844 kb on - strand, within DvMF_1460at 1789.928 kb on - strand, within DvMF_1460at 1790.109 kb on - strand, within DvMF_1460at 1790.325 kb on + strand, within DvMF_1460at 1790.330 kb on - strand, within DvMF_1460at 1790.475 kb on - strand, within DvMF_1460

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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1,788,260 + -1.0
1,788,696 + DvMF_1459 0.52 -0.8
1,788,709 - DvMF_1459 0.53 -0.8
1,788,709 - DvMF_1459 0.53 -0.5
1,789,006 + DvMF_1459 0.84 -1.0
1,789,203 + -0.5
1,789,310 + -1.6
1,789,464 - DvMF_1460 0.17 -0.5
1,789,525 + DvMF_1460 0.22 -1.7
1,789,626 + DvMF_1460 0.29 +0.7
1,789,693 - DvMF_1460 0.33 -1.8
1,789,844 - DvMF_1460 0.44 -0.0
1,789,928 - DvMF_1460 0.50 -0.7
1,790,109 - DvMF_1460 0.63 -1.5
1,790,325 + DvMF_1460 0.78 -1.3
1,790,330 - DvMF_1460 0.78 +0.2
1,790,475 - DvMF_1460 0.88 +0.5

Or see this region's nucleotide sequence