Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1436 and DvMF_1437 are separated by 226 nucleotides DvMF_1437 and DvMF_1438 are separated by 154 nucleotides DvMF_1438 and DvMF_1439 are separated by 550 nucleotides
DvMF_1436: DvMF_1436 - hypothetical protein (RefSeq), at 1,758,348 to 1,759,229
_1436
DvMF_1437: DvMF_1437 - transcriptional regulator, MarR family (RefSeq), at 1,759,456 to 1,759,872
_1437
DvMF_1438: DvMF_1438 - protein of unknown function UPF0016 (RefSeq), at 1,760,027 to 1,760,614
_1438
DvMF_1439: DvMF_1439 - putative phytochrome sensor protein (RefSeq), at 1,761,165 to 1,761,728
_1439
Position (kb)
1760
1761 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1759.054 kb on + strand, within DvMF_1436 at 1759.096 kb on - strand, within DvMF_1436 at 1759.213 kb on - strand at 1759.396 kb on + strand at 1759.548 kb on + strand, within DvMF_1437 at 1759.552 kb on - strand, within DvMF_1437 at 1760.007 kb on - strand at 1760.033 kb on - strand at 1760.033 kb on - strand at 1760.191 kb on + strand, within DvMF_1438 at 1760.199 kb on - strand, within DvMF_1438 at 1760.293 kb on - strand, within DvMF_1438 at 1760.325 kb on + strand, within DvMF_1438 at 1760.465 kb on - strand, within DvMF_1438 at 1760.658 kb on + strand at 1760.750 kb on + strand at 1760.893 kb on - strand at 1761.149 kb on + strand at 1761.293 kb on + strand, within DvMF_1439 at 1761.301 kb on - strand, within DvMF_1439 at 1761.341 kb on - strand, within DvMF_1439 at 1761.420 kb on + strand, within DvMF_1439 at 1761.522 kb on - strand, within DvMF_1439
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 1,759,054 + DvMF_1436 0.80 -0.4 1,759,096 - DvMF_1436 0.85 -0.3 1,759,213 - +0.7 1,759,396 + -0.7 1,759,548 + DvMF_1437 0.22 -5.7 1,759,552 - DvMF_1437 0.23 -2.0 1,760,007 - -0.7 1,760,033 - -0.9 1,760,033 - -0.1 1,760,191 + DvMF_1438 0.28 -1.0 1,760,199 - DvMF_1438 0.29 -0.5 1,760,293 - DvMF_1438 0.45 -0.5 1,760,325 + DvMF_1438 0.51 +0.4 1,760,465 - DvMF_1438 0.74 -1.1 1,760,658 + -3.5 1,760,750 + -0.3 1,760,893 - -0.3 1,761,149 + -0.5 1,761,293 + DvMF_1439 0.23 -2.0 1,761,301 - DvMF_1439 0.24 -0.7 1,761,341 - DvMF_1439 0.31 -0.3 1,761,420 + DvMF_1439 0.45 -0.2 1,761,522 - DvMF_1439 0.63 -0.4
Or see this region's nucleotide sequence