Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1252

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1251 and DvMF_1252 are separated by 122 nucleotidesDvMF_1252 and DvMF_1253 are separated by 11 nucleotides DvMF_1251: DvMF_1251 - multi-sensor hybrid histidine kinase (RefSeq), at 1,546,455 to 1,549,760 _1251 DvMF_1252: DvMF_1252 - Ethanolamine ammonia-lyase (RefSeq), at 1,549,883 to 1,550,725 _1252 DvMF_1253: DvMF_1253 - Ethanolamine ammonia lyase large subunit (RefSeq), at 1,550,737 to 1,552,095 _1253 Position (kb) 1549 1550 1551Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1549.294 kb on + strand, within DvMF_1251at 1549.297 kb on - strand, within DvMF_1251at 1549.450 kb on - strandat 1549.572 kb on + strandat 1549.634 kb on + strandat 1549.685 kb on + strandat 1549.766 kb on + strandat 1550.127 kb on - strand, within DvMF_1252at 1550.158 kb on + strand, within DvMF_1252at 1550.243 kb on - strand, within DvMF_1252at 1550.265 kb on - strand, within DvMF_1252at 1550.331 kb on + strand, within DvMF_1252at 1550.488 kb on - strand, within DvMF_1252at 1550.553 kb on - strand, within DvMF_1252at 1550.705 kb on + strandat 1550.768 kb on - strandat 1550.768 kb on - strandat 1550.768 kb on - strandat 1550.991 kb on + strand, within DvMF_1253at 1551.052 kb on - strand, within DvMF_1253at 1551.193 kb on - strand, within DvMF_1253at 1551.336 kb on + strand, within DvMF_1253at 1551.400 kb on + strand, within DvMF_1253at 1551.460 kb on + strand, within DvMF_1253at 1551.460 kb on + strand, within DvMF_1253at 1551.594 kb on - strand, within DvMF_1253at 1551.705 kb on + strand, within DvMF_1253

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
remove
1,549,294 + DvMF_1251 0.86 -1.3
1,549,297 - DvMF_1251 0.86 -0.1
1,549,450 - +0.2
1,549,572 + -0.8
1,549,634 + -1.5
1,549,685 + -1.2
1,549,766 + -2.0
1,550,127 - DvMF_1252 0.29 -2.4
1,550,158 + DvMF_1252 0.33 -0.9
1,550,243 - DvMF_1252 0.43 -3.9
1,550,265 - DvMF_1252 0.45 -0.3
1,550,331 + DvMF_1252 0.53 -1.9
1,550,488 - DvMF_1252 0.72 -1.1
1,550,553 - DvMF_1252 0.79 -0.6
1,550,705 + -0.8
1,550,768 - -0.1
1,550,768 - +0.3
1,550,768 - -0.6
1,550,991 + DvMF_1253 0.19 -2.5
1,551,052 - DvMF_1253 0.23 +0.7
1,551,193 - DvMF_1253 0.34 -4.0
1,551,336 + DvMF_1253 0.44 -0.2
1,551,400 + DvMF_1253 0.49 -1.3
1,551,460 + DvMF_1253 0.53 -0.8
1,551,460 + DvMF_1253 0.53 +0.1
1,551,594 - DvMF_1253 0.63 +0.1
1,551,705 + DvMF_1253 0.71 -0.8

Or see this region's nucleotide sequence