Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1229

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1228 and DvMF_1229 are separated by 718 nucleotidesDvMF_1229 and DvMF_1230 are separated by 314 nucleotides DvMF_1228: DvMF_1228 - no description, at 1,515,746 to 1,515,868 _1228 DvMF_1229: DvMF_1229 - carbon starvation protein CstA (RefSeq), at 1,516,587 to 1,518,005 _1229 DvMF_1230: DvMF_1230 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,518,320 to 1,519,405 _1230 Position (kb) 1516 1517 1518 1519Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1515.607 kb on - strandat 1515.697 kb on - strandat 1515.697 kb on - strandat 1515.709 kb on + strandat 1515.917 kb on - strandat 1516.042 kb on + strandat 1516.084 kb on - strandat 1516.095 kb on - strandat 1516.838 kb on + strand, within DvMF_1229at 1516.960 kb on + strand, within DvMF_1229at 1517.245 kb on - strand, within DvMF_1229at 1517.255 kb on + strand, within DvMF_1229at 1517.263 kb on - strand, within DvMF_1229at 1517.442 kb on - strand, within DvMF_1229at 1517.458 kb on + strand, within DvMF_1229at 1517.507 kb on + strand, within DvMF_1229at 1517.539 kb on - strand, within DvMF_1229at 1517.766 kb on - strand, within DvMF_1229at 1517.773 kb on + strand, within DvMF_1229at 1517.781 kb on - strand, within DvMF_1229at 1518.270 kb on - strandat 1518.783 kb on - strand, within DvMF_1230

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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1,515,607 - +1.2
1,515,697 - +1.0
1,515,697 - -1.0
1,515,709 + -0.7
1,515,917 - +0.2
1,516,042 + -0.9
1,516,084 - -4.0
1,516,095 - -0.4
1,516,838 + DvMF_1229 0.18 -0.8
1,516,960 + DvMF_1229 0.26 -1.6
1,517,245 - DvMF_1229 0.46 -3.9
1,517,255 + DvMF_1229 0.47 -2.5
1,517,263 - DvMF_1229 0.48 -2.6
1,517,442 - DvMF_1229 0.60 -1.8
1,517,458 + DvMF_1229 0.61 -3.4
1,517,507 + DvMF_1229 0.65 -4.6
1,517,539 - DvMF_1229 0.67 -4.8
1,517,766 - DvMF_1229 0.83 -1.0
1,517,773 + DvMF_1229 0.84 -3.0
1,517,781 - DvMF_1229 0.84 +1.6
1,518,270 - -0.5
1,518,783 - DvMF_1230 0.43 -0.9

Or see this region's nucleotide sequence