Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1197

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1196 and DvMF_1197 are separated by 309 nucleotidesDvMF_1197 and DvMF_1198 are separated by 177 nucleotidesDvMF_1198 and DvMF_1199 are separated by 421 nucleotides DvMF_1196: DvMF_1196 - sulfur relay protein, TusE/DsrC/DsvC family (RefSeq), at 1,475,308 to 1,475,625 _1196 DvMF_1197: DvMF_1197 - hypothetical protein (RefSeq), at 1,475,935 to 1,476,207 _1197 DvMF_1198: DvMF_1198 - no description, at 1,476,385 to 1,476,585 _1198 DvMF_1199: DvMF_1199 - putative ABC transporter solute-binding protein (RefSeq), at 1,477,007 to 1,478,299 _1199 Position (kb) 1475 1476 1477Strain fitness (log2 ratio) -1 0 1at 1476.022 kb on - strand, within DvMF_1197at 1476.173 kb on + strand, within DvMF_1197at 1476.491 kb on + strand, within DvMF_1198at 1476.724 kb on + strandat 1476.872 kb on - strandat 1476.979 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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1,476,022 - DvMF_1197 0.32 +0.6
1,476,173 + DvMF_1197 0.87 -0.3
1,476,491 + DvMF_1198 0.53 -0.1
1,476,724 + -1.0
1,476,872 - -1.4
1,476,979 + -0.3

Or see this region's nucleotide sequence