Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1027

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1025 and DvMF_1026 are separated by 4 nucleotidesDvMF_1026 and DvMF_1027 are separated by 26 nucleotidesDvMF_1027 and DvMF_1028 are separated by 58 nucleotides DvMF_1025: DvMF_1025 - hypothetical protein (RefSeq), at 1,244,708 to 1,245,256 _1025 DvMF_1026: DvMF_1026 - hypothetical protein (RefSeq), at 1,245,261 to 1,245,866 _1026 DvMF_1027: DvMF_1027 - type II and III secretion system protein (RefSeq), at 1,245,893 to 1,247,551 _1027 DvMF_1028: DvMF_1028 - type II secretion system protein E (RefSeq), at 1,247,610 to 1,249,316 _1028 Position (kb) 1245 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1at 1244.947 kb on - strand, within DvMF_1025at 1245.165 kb on - strand, within DvMF_1025at 1245.500 kb on - strand, within DvMF_1026at 1245.677 kb on + strand, within DvMF_1026at 1245.695 kb on - strand, within DvMF_1026at 1245.721 kb on + strand, within DvMF_1026at 1245.738 kb on - strand, within DvMF_1026at 1245.802 kb on - strand, within DvMF_1026at 1245.917 kb on + strandat 1245.925 kb on - strandat 1245.975 kb on - strandat 1246.133 kb on + strand, within DvMF_1027at 1246.165 kb on + strand, within DvMF_1027at 1246.301 kb on + strand, within DvMF_1027at 1246.448 kb on + strand, within DvMF_1027at 1247.199 kb on + strand, within DvMF_1027at 1247.259 kb on - strand, within DvMF_1027at 1247.267 kb on - strand, within DvMF_1027at 1247.446 kb on - strandat 1247.451 kb on - strandat 1247.542 kb on - strandat 1247.606 kb on - strandat 1247.655 kb on - strandat 1247.680 kb on - strandat 1247.721 kb on - strandat 1247.738 kb on - strandat 1247.822 kb on - strand, within DvMF_1028at 1247.824 kb on + strand, within DvMF_1028at 1247.859 kb on + strand, within DvMF_1028at 1247.889 kb on + strand, within DvMF_1028at 1248.017 kb on + strand, within DvMF_1028at 1248.227 kb on + strand, within DvMF_1028at 1248.349 kb on + strand, within DvMF_1028at 1248.502 kb on + strand, within DvMF_1028

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
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1,244,947 - DvMF_1025 0.44 -0.3
1,245,165 - DvMF_1025 0.83 +0.7
1,245,500 - DvMF_1026 0.39 +0.5
1,245,677 + DvMF_1026 0.69 +1.0
1,245,695 - DvMF_1026 0.72 +0.1
1,245,721 + DvMF_1026 0.76 +0.8
1,245,738 - DvMF_1026 0.79 +0.0
1,245,802 - DvMF_1026 0.89 +0.0
1,245,917 + +0.8
1,245,925 - +1.5
1,245,975 - +0.2
1,246,133 + DvMF_1027 0.14 +0.4
1,246,165 + DvMF_1027 0.16 +0.3
1,246,301 + DvMF_1027 0.25 +0.7
1,246,448 + DvMF_1027 0.33 +0.5
1,247,199 + DvMF_1027 0.79 +0.5
1,247,259 - DvMF_1027 0.82 +0.5
1,247,267 - DvMF_1027 0.83 +0.5
1,247,446 - +0.5
1,247,451 - -0.3
1,247,542 - +0.8
1,247,606 - +0.2
1,247,655 - +0.4
1,247,680 - -1.3
1,247,721 - +1.4
1,247,738 - -1.8
1,247,822 - DvMF_1028 0.12 -0.3
1,247,824 + DvMF_1028 0.13 +0.3
1,247,859 + DvMF_1028 0.15 +0.2
1,247,889 + DvMF_1028 0.16 +0.8
1,248,017 + DvMF_1028 0.24 +1.0
1,248,227 + DvMF_1028 0.36 -0.0
1,248,349 + DvMF_1028 0.43 -0.2
1,248,502 + DvMF_1028 0.52 +0.1

Or see this region's nucleotide sequence