Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0740 and DvMF_0741 are separated by 187 nucleotides DvMF_0741 and DvMF_0742 are separated by 3 nucleotides DvMF_0742 and DvMF_0743 are separated by 161 nucleotides
DvMF_0740: DvMF_0740 - Mu tail sheath family protein (RefSeq), at 886,626 to 888,047
_0740
DvMF_0741: DvMF_0741 - hypothetical protein (RefSeq), at 888,235 to 888,609
_0741
DvMF_0742: DvMF_0742 - hypothetical protein (RefSeq), at 888,613 to 888,942
_0742
DvMF_0743: DvMF_0743 - hypothetical protein (RefSeq), at 889,104 to 891,044
_0743
Position (kb) 888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 887.635 kb on - strand, within DvMF_0740 at 887.642 kb on - strand, within DvMF_0740 at 887.655 kb on - strand, within DvMF_0740 at 887.869 kb on + strand, within DvMF_0740 at 888.233 kb on - strand at 888.239 kb on - strand at 888.395 kb on - strand, within DvMF_0741 at 888.400 kb on - strand, within DvMF_0741 at 888.843 kb on + strand, within DvMF_0742 at 889.124 kb on + strand at 889.131 kb on - strand at 889.279 kb on - strand at 889.421 kb on + strand, within DvMF_0743 at 889.421 kb on + strand, within DvMF_0743 at 889.524 kb on - strand, within DvMF_0743 at 889.757 kb on + strand, within DvMF_0743 at 889.883 kb on - strand, within DvMF_0743
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 887,635 - DvMF_0740 0.71 +0.1 887,642 - DvMF_0740 0.71 +0.0 887,655 - DvMF_0740 0.72 -0.8 887,869 + DvMF_0740 0.87 -0.4 888,233 - -1.0 888,239 - -0.7 888,395 - DvMF_0741 0.43 -0.6 888,400 - DvMF_0741 0.44 -0.4 888,843 + DvMF_0742 0.70 +0.2 889,124 + -0.1 889,131 - -1.9 889,279 - +2.6 889,421 + DvMF_0743 0.16 -1.6 889,421 + DvMF_0743 0.16 -0.4 889,524 - DvMF_0743 0.22 -0.4 889,757 + DvMF_0743 0.34 +0.4 889,883 - DvMF_0743 0.40 -3.3
Or see this region's nucleotide sequence