Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0344

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0343 and DvMF_0344 are separated by 24 nucleotidesDvMF_0344 and DvMF_0345 are separated by 124 nucleotides DvMF_0343: DvMF_0343 - putative GAF sensor protein (RefSeq), at 402,023 to 403,123 _0343 DvMF_0344: DvMF_0344 - rod shape-determining protein MreB (RefSeq), at 403,148 to 404,170 _0344 DvMF_0345: DvMF_0345 - Inositol-phosphate phosphatase (RefSeq), at 404,295 to 405,161 _0345 Position (kb) 403 404 405Strain fitness (log2 ratio) -3 -2 -1 0 1at 403.151 kb on - strandat 403.193 kb on + strandat 403.224 kb on + strandat 403.232 kb on - strandat 403.279 kb on + strand, within DvMF_0344at 403.287 kb on - strand, within DvMF_0344at 403.649 kb on - strand, within DvMF_0344at 404.120 kb on + strandat 404.151 kb on + strandat 404.206 kb on + strandat 404.861 kb on - strand, within DvMF_0345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
remove
403,151 - -1.0
403,193 + -1.0
403,224 + -0.9
403,232 - -0.8
403,279 + DvMF_0344 0.13 -0.5
403,287 - DvMF_0344 0.14 +0.2
403,649 - DvMF_0344 0.49 +0.5
404,120 + -3.2
404,151 + +1.2
404,206 + -0.5
404,861 - DvMF_0345 0.65 -1.9

Or see this region's nucleotide sequence