Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0337 and DvMF_0338 are separated by 179 nucleotides DvMF_0338 and DvMF_0339 are separated by 119 nucleotides DvMF_0339 and DvMF_0340 are separated by 365 nucleotides
DvMF_0337: DvMF_0337 - phospholipid/glycerol acyltransferase (RefSeq), at 393,970 to 394,812
_0337
DvMF_0338: DvMF_0338 - glycosyl transferase, group 2 family protein (RefSeq), at 394,992 to 395,663
_0338
DvMF_0339: DvMF_0339 - recombination factor protein RarA (RefSeq), at 395,783 to 397,009
_0339
DvMF_0340: DvMF_0340 - 16S ribosomal RNA methyltransferase RsmE (RefSeq), at 397,375 to 398,094
_0340
Position (kb) 395
396
397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 394.860 kb on + strand at 395.343 kb on - strand, within DvMF_0338 at 395.410 kb on + strand, within DvMF_0338 at 395.594 kb on + strand, within DvMF_0338 at 395.602 kb on - strand at 395.716 kb on + strand at 396.045 kb on + strand, within DvMF_0339 at 396.326 kb on - strand, within DvMF_0339 at 396.455 kb on + strand, within DvMF_0339 at 396.883 kb on + strand, within DvMF_0339 at 396.974 kb on - strand at 397.082 kb on - strand at 397.238 kb on + strand at 397.399 kb on + strand at 397.523 kb on - strand, within DvMF_0340
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml remove 394,860 + -2.8 395,343 - DvMF_0338 0.52 -0.9 395,410 + DvMF_0338 0.62 -2.1 395,594 + DvMF_0338 0.90 -1.9 395,602 - -1.5 395,716 + -0.8 396,045 + DvMF_0339 0.21 +0.1 396,326 - DvMF_0339 0.44 -0.3 396,455 + DvMF_0339 0.55 -0.2 396,883 + DvMF_0339 0.90 -0.1 396,974 - -0.7 397,082 - -0.3 397,238 + -0.5 397,399 + -0.1 397,523 - DvMF_0340 0.21 -0.7
Or see this region's nucleotide sequence