Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0031

Experiment: MoLS4 with D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0030 and DvMF_0031 are separated by 298 nucleotidesDvMF_0031 and DvMF_0032 are separated by 276 nucleotides DvMF_0030: DvMF_0030 - hypothetical protein (RefSeq), at 38,598 to 38,939 _0030 DvMF_0031: DvMF_0031 - hypothetical protein (RefSeq), at 39,238 to 39,513 _0031 DvMF_0032: DvMF_0032 - diguanylate cyclase (RefSeq), at 39,790 to 41,526 _0032 Position (kb) 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 38.251 kb on + strandat 38.371 kb on + strandat 38.400 kb on + strandat 38.469 kb on - strandat 38.482 kb on - strandat 38.558 kb on - strandat 38.569 kb on - strandat 38.663 kb on + strand, within DvMF_0030at 38.703 kb on + strand, within DvMF_0030at 38.788 kb on - strand, within DvMF_0030at 38.913 kb on - strandat 38.931 kb on + strandat 38.996 kb on - strandat 39.227 kb on - strandat 39.295 kb on + strand, within DvMF_0031at 39.303 kb on - strand, within DvMF_0031at 39.765 kb on + strandat 39.774 kb on + strandat 39.798 kb on + strandat 40.082 kb on - strand, within DvMF_0032at 40.170 kb on - strand, within DvMF_0032at 40.287 kb on + strand, within DvMF_0032at 40.327 kb on - strand, within DvMF_0032

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.125 mg/ml
remove
38,251 + -1.0
38,371 + -1.5
38,400 + -0.6
38,469 - +1.2
38,482 - -0.9
38,558 - -1.0
38,569 - -0.3
38,663 + DvMF_0030 0.19 +0.5
38,703 + DvMF_0030 0.31 -3.5
38,788 - DvMF_0030 0.56 -2.1
38,913 - -0.4
38,931 + -0.4
38,996 - -0.1
39,227 - +0.5
39,295 + DvMF_0031 0.21 -1.1
39,303 - DvMF_0031 0.24 -4.5
39,765 + -0.3
39,774 + -0.7
39,798 + +0.2
40,082 - DvMF_0032 0.17 +0.7
40,170 - DvMF_0032 0.22 -0.1
40,287 + DvMF_0032 0.29 -1.0
40,327 - DvMF_0032 0.31 -0.7

Or see this region's nucleotide sequence